PDB Entry (6vm2)

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Visualizer: MichelaNGLo

PDB ID: 6vm2 Resolution: 3.34 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32719334 DOI: 10.1038/s41467-020-17364-5
Protein
Protein Name: Glycine receptor subunit alphaZ1
Protein Class: SIGNALING PROTEIN
Uniprot ID/ACC: O93430 (GLRA1_DANRE) Organism: Danio rerio
Gene Symbol: glra1 Gene ID: 30676
Pocket Descriptors
Volume: 42.176 Depth: 10.9842
Hydrophobicity: 0.803922 Drug Score: 0.395767
Pocket Similarity: Calculate
Ligand
Ligand Name:   GLYCINE
HET ID:   GLY PubChem:   5257127750
DrugBank:   DB00145 ChEMBL:   CHEMBL773
Canonical SMILES:   NCC(=O)O
Standard InChI:   InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)
Molecular Formula:   C2H5NO2 Mol. Weight:   75.0666 Heavy Atoms:   5
Charge:   0 Is Chiral:   False logP:   -0.27
HBD:   2 HBA:   3 TPSA:   63.32
#Bonds:   4 #Rotatable Bonds:   1 Shape Complexity:   0.5
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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