PDB Entry (6vnq)

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Visualizer: MichelaNGLo

PDB ID: 6vnq Resolution: 2.05 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32348628 DOI: 10.1002/cmdc.202000149
Protein
Protein Name: Polyamine deacetylase HDAC10
Protein Class: HYDROLASE
Uniprot ID/ACC: F1QCV2 (HDA10_DANRE) Organism: Danio rerio
Gene Symbol: hdac10 Gene ID: 327253
Pocket Descriptors
Volume: 204.224 Depth: 14.992
Hydrophobicity: 0.763158 Drug Score: 0.43751
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-hydroxy-1-{[4-(hydroxycarbamoyl)phenyl]methyl}-1H-indole-6-carboxamide
HET ID:   R5G PubChem:   146035570
DrugBank:   - ChEMBL:   -
Canonical SMILES:   ONC(=O)c1ccc(cc1)Cn1ccc2c1cc(cc2)C(=O)NO
Standard InChI:   InChI=1S/C17H15N3O4/c21-16(18-23)13-3-1-11(2-4-13)10-20-8-7-12-5-6-14(9-15(12)20)17(22)19-24/h1-9,23-24H,10H2,(H,18,21)(H,19,22)
Molecular Formula:   C17H15N3O4 Mol. Weight:   325.3187 Heavy Atoms:   24
Charge:   0 Is Chiral:   False logP:   2.7094
HBD:   4 HBA:   7 TPSA:   103.59
#Bonds:   26 #Rotatable Bonds:   6 Shape Complexity:   0.05882353
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-