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PDB Entry (6vnq) Download |
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Visualizer: MichelaNGLo |
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| PDB ID: 6vnq | Resolution: 2.05 Å | Exp. Method: X-RAY DIFFRACTION |
| PMID: 32348628 | DOI: 10.1002/cmdc.202000149 | |
Protein |
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| Protein Name: Polyamine deacetylase HDAC10 | |
| Protein Class: HYDROLASE | |
| Uniprot ID/ACC: F1QCV2 (HDA10_DANRE) | Organism: Danio rerio |
| Gene Symbol: hdac10 | Gene ID: 327253 |
Pocket Descriptors | |
| Volume: 204.224 | Depth: 14.992 |
| Hydrophobicity: 0.763158 | Drug Score: 0.43751 |
| Pocket Similarity: Calculate | |
Ligand |
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| Ligand Name: N-hydroxy-1-{[4-(hydroxycarbamoyl)phenyl]methyl}-1H-indole-6-carboxamide | ||
| HET ID: R5G | PubChem: 146035570 | |
| DrugBank: - | ChEMBL: - | |
| Canonical SMILES: ONC(=O)c1ccc(cc1)Cn1ccc2c1cc(cc2)C(=O)NO | ||
| Standard InChI: InChI=1S/C17H15N3O4/c21-16(18-23)13-3-1-11(2-4-13)10-20-8-7-12-5-6-14(9-15(12)20)17(22)19-24/h1-9,23-24H,10H2,(H,18,21)(H,19,22) | ||
| Molecular Formula: C17H15N3O4 | Mol. Weight: 325.3187 | Heavy Atoms: 24 |
| Charge: 0 | Is Chiral: False | logP: 2.7094 |
| HBD: 4 | HBA: 7 | TPSA: 103.59 |
| #Bonds: 26 | #Rotatable Bonds: 6 | Shape Complexity: 0.05882353 |
| Stereocomplexity: 0.0 | Ligand Type: Small Molecule | |
Binding Affinity |
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