PDB Entry (6wyq) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6wyq | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32880591 | DOI: 10.1107/S2053230X20010250 | |
Protein |
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Protein Name: Histone deacetylase 6 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: F8W4B7 (F8W4B7_DANRE) | Organism: Danio rerio |
Gene Symbol: hdac6 | Gene ID: 565482 |
Pocket Descriptors | |
Volume: 1835.01 | Depth: 38.6756 |
Hydrophobicity: 0.679487 | Drug Score: 0.998931 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N~1~-hydroxy-N~8~-(4-iodophenyl)octanediamide | ||
HET ID: UFJ | PubChem: 46205754 | |
DrugBank: - | ChEMBL: CHEMBL1091578 | |
Canonical SMILES: ONC(=O)CCCCCCC(=O)Nc1ccc(cc1)I | ||
Standard InChI: InChI=1S/C14H19IN2O3/c15-11-7-9-12(10-8-11)16-13(18)5-3-1-2-4-6-14(19)17-20/h7-10,20H,1-6H2,(H,16,18)(H,17,19) | ||
Molecular Formula: C14H19IN2O3 | Mol. Weight: 390.21674 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: False | logP: 3.5396 |
HBD: 3 | HBA: 5 | TPSA: 78.43 |
#Bonds: 20 | #Rotatable Bonds: 10 | Shape Complexity: 0.42857143 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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