PDB Entry (6wyq)

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Visualizer: MichelaNGLo

PDB ID: 6wyq Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32880591 DOI: 10.1107/S2053230X20010250
Protein
Protein Name: Histone deacetylase 6
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: F8W4B7 (F8W4B7_DANRE) Organism: Danio rerio
Gene Symbol: hdac6 Gene ID: 565482
Pocket Descriptors
Volume: 1835.01 Depth: 38.6756
Hydrophobicity: 0.679487 Drug Score: 0.998931
Pocket Similarity: Calculate
Ligand
Ligand Name:   N~1~-hydroxy-N~8~-(4-iodophenyl)octanediamide
HET ID:   UFJ PubChem:   46205754
DrugBank:   - ChEMBL:   CHEMBL1091578
Canonical SMILES:   ONC(=O)CCCCCCC(=O)Nc1ccc(cc1)I
Standard InChI:   InChI=1S/C14H19IN2O3/c15-11-7-9-12(10-8-11)16-13(18)5-3-1-2-4-6-14(19)17-20/h7-10,20H,1-6H2,(H,16,18)(H,17,19)
Molecular Formula:   C14H19IN2O3 Mol. Weight:   390.21674 Heavy Atoms:   20
Charge:   0 Is Chiral:   False logP:   3.5396
HBD:   3 HBA:   5 TPSA:   78.43
#Bonds:   20 #Rotatable Bonds:   10 Shape Complexity:   0.42857143
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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