PDB Entry (6pye)

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Visualizer: MichelaNGLo

PDB ID: 6pye Resolution: 1.48 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32803970 DOI: 10.1021/acs.jmedchem.9b01888
Protein
Protein Name: Hdac6 protein
Protein Class: HYDROLASE
Uniprot ID/ACC: A7YT55 (A7YT55_DANRE) Organism: Danio rerio
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 102.4 Depth: 11.5693
Hydrophobicity: 0.75 Drug Score: 0.513762
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-[(1-benzyl-1H-tetrazol-5-yl)methyl]-N-{[4-(hydroxycarbamoyl)phenyl]methyl}-2-(trifluoromethyl)benzamide
HET ID:   P5Y PubChem:   146680839
DrugBank:   - ChEMBL:   -
Canonical SMILES:   ONC(=O)c1ccc(cc1)CN(C(=O)c1ccccc1C(F)(F)F)Cc1nnnn1Cc1ccccc1
Standard InChI:   InChI=1S/C25H21F3N6O3/c26-25(27,28)21-9-5-4-8-20(21)24(36)33(14-18-10-12-19(13-11-18)23(35)30-37)16-22-29-31-32-34(22)15-17-6-2-1-3-7-17/h1-13,37H,14-16H2,(H,30,35)
Molecular Formula:   C25H21F3N6O3 Mol. Weight:   510.46783 Heavy Atoms:   37
Charge:   0 Is Chiral:   False logP:   4.0927
HBD:   2 HBA:   9 TPSA:   113.24
#Bonds:   40 #Rotatable Bonds:   11 Shape Complexity:   0.16
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-