PDB Entry (6pye) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6pye | Resolution: 1.48 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32803970 | DOI: 10.1021/acs.jmedchem.9b01888 | |
Protein |
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Protein Name: Hdac6 protein | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: A7YT55 (A7YT55_DANRE) | Organism: Danio rerio |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 102.4 | Depth: 11.5693 |
Hydrophobicity: 0.75 | Drug Score: 0.513762 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-[(1-benzyl-1H-tetrazol-5-yl)methyl]-N-{[4-(hydroxycarbamoyl)phenyl]methyl}-2-(trifluoromethyl)benzamide | ||
HET ID: P5Y | PubChem: 146680839 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: ONC(=O)c1ccc(cc1)CN(C(=O)c1ccccc1C(F)(F)F)Cc1nnnn1Cc1ccccc1 | ||
Standard InChI: InChI=1S/C25H21F3N6O3/c26-25(27,28)21-9-5-4-8-20(21)24(36)33(14-18-10-12-19(13-11-18)23(35)30-37)16-22-29-31-32-34(22)15-17-6-2-1-3-7-17/h1-13,37H,14-16H2,(H,30,35) | ||
Molecular Formula: C25H21F3N6O3 | Mol. Weight: 510.46783 | Heavy Atoms: 37 |
Charge: 0 | Is Chiral: False | logP: 4.0927 |
HBD: 2 | HBA: 9 | TPSA: 113.24 |
#Bonds: 40 | #Rotatable Bonds: 11 | Shape Complexity: 0.16 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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