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PDB Entry (6l1f) Download |
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Visualizer: MichelaNGLo |
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| PDB ID: 6l1f | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
| PMID: 32885980 | DOI: 10.1021/acs.jpclett.0c02039 | |
Protein |
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| Protein Name: PHD finger protein 20-like protein 1 | |
| Protein Class: TRANSCRIPTION REGULATOR | |
| Uniprot ID/ACC: A8MW92 (P20L1_HUMAN) | Organism: Homo sapiens |
| Gene Symbol: PHF20L1 | Gene ID: 51105 |
Pocket Descriptors | |
| Volume: 200.832 | Depth: 11.6893 |
| Hydrophobicity: 0.733333 | Drug Score: 0.126461 |
| Pocket Similarity: Calculate | |
Ligand |
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| Ligand Name: N-METHYL-LYSINE | ||
| HET ID: MLZ | PubChem: 164795 | |
| DrugBank: DB01714 | ChEMBL: CHEMBL1234366 | |
| Canonical SMILES: CNCCCC[C@@H](C(=O)O)N | ||
| Standard InChI: InChI=1S/C7H16N2O2/c1-9-5-3-2-4-6(8)7(10)11/h6,9H,2-5,8H2,1H3,(H,10,11)/t6-/m0/s1 | ||
| Molecular Formula: C7H16N2O2 | Mol. Weight: 160.21414 | Heavy Atoms: 11 |
| Charge: 0 | Is Chiral: True | logP: 0.8792 |
| HBD: 3 | HBA: 4 | TPSA: 75.35 |
| #Bonds: 11 | #Rotatable Bonds: 6 | Shape Complexity: 0.85714287 |
| Stereocomplexity: 0.14285715 | Ligand Type: Dnmt1-K142me1 | |
Binding Affinity |
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