PDB Entry (3kmt) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3kmt | Resolution: 1.78 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 20937900 | DOI: 10.1073/pnas.1009911107 | |
Protein |
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Protein Name: Histone H3K27 methylase | |
Protein Class: VIRAL PROTEIN | |
Uniprot ID/ACC: O41094 (O41094_PBCV1) | Organism: Paramecium bursaria Chlorella virus 1 (PBCV-1) |
Gene Symbol: - | Gene ID: 918052 |
Pocket Descriptors | |
Volume: 1151.81 | Depth: 26.4886 |
Hydrophobicity: 0.727273 | Drug Score: 0.774953 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-METHYL-LYSINE | ||
HET ID: MLZ | PubChem: 164795 | |
DrugBank: DB01714 | ChEMBL: CHEMBL1234366 | |
Canonical SMILES: CNCCCC[C@@H](C(=O)O)N | ||
Standard InChI: InChI=1S/C7H16N2O2/c1-9-5-3-2-4-6(8)7(10)11/h6,9H,2-5,8H2,1H3,(H,10,11)/t6-/m0/s1 | ||
Molecular Formula: C7H16N2O2 | Mol. Weight: 160.21414 | Heavy Atoms: 11 |
Charge: 0 | Is Chiral: True | logP: 0.8792 |
HBD: 3 | HBA: 4 | TPSA: 75.35 |
#Bonds: 11 | #Rotatable Bonds: 6 | Shape Complexity: 0.85714287 |
Stereocomplexity: 0.14285715 | Ligand Type: H3K27me1 |
Binding Affinity |
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