PDB Entry (2lto)

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Visualizer: MichelaNGLo

PDB ID: 2lto Resolution: None Å Exp. Method: SOLUTION NMR
PMID: 23066109 DOI: 10.1093/nar/gks929
Protein
Protein Name: Tudor domain-containing protein 3
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9H7E2 (TDRD3_HUMAN) Organism: Homo sapiens
Gene Symbol: TDRD3 Gene ID: 81550
Pocket Descriptors
Volume: 141.312 Depth: 9.44881
Hydrophobicity: 0.75 Drug Score: 0.259014
Pocket Similarity: Calculate
Ligand
Ligand Name:   NG,NG-DIMETHYL-L-ARGININE
HET ID:   DA2 PubChem:   123831
DrugBank:   DB01686 ChEMBL:   CHEMBL457530
Canonical SMILES:   OC(=O)[C@H](CCCNC(=N)N(C)C)N
Standard InChI:   InChI=1S/C8H18N4O2/c1-12(2)8(10)11-5-3-4-6(9)7(13)14/h6H,3-5,9H2,1-2H3,(H2,10,11)(H,13,14)/t6-/m0/s1
Molecular Formula:   C8H18N4O2 Mol. Weight:   202.25412 Heavy Atoms:   14
Charge:   0 Is Chiral:   True logP:   0.4554
HBD:   4 HBA:   6 TPSA:   102.44
#Bonds:   14 #Rotatable Bonds:   7 Shape Complexity:   0.75
Stereocomplexity:   0.125 Ligand Type:   Rpb1-Rme2a
Binding Affinity
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