PDB Entry (1dl7) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1dl7 | Resolution: 2.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 10859335 | DOI: 10.1084/jem.191.12.2101 | |
Protein |
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Protein Name: Ig lambda-1 chain V regions MOPC 104E/RPC20/J558/S104 | |
Protein Class: ANTIBODY | |
Uniprot ID/ACC: P01724 (LV1B_MOUSE) | Organism: Mus musculus |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 807.36 | Depth: 20.6223 |
Hydrophobicity: 0.712644 | Drug Score: 0.545874 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: P-NITROPHENYL-PHOSPHOCHOLINE | ||
HET ID: NCH | PubChem: 445100 | |
DrugBank: - | ChEMBL: CHEMBL1234651 | |
Canonical SMILES: O[P@](=O)(Oc1ccc(cc1)[N+](=O)[O-])OCC[N+](C)(C)C | ||
Standard InChI: InChI=1S/C11H17N2O6P/c1-13(2,3)8-9-18-20(16,17)19-11-6-4-10(5-7-11)12(14)15/h4-7H,8-9H2,1-3H3/p+1 | ||
Molecular Formula: C11H18N2O6P+ | Mol. Weight: 305.24417 | Heavy Atoms: 20 |
Charge: 1 | Is Chiral: False | logP: 2.32 |
HBD: 1 | HBA: 4 | TPSA: 111.39 |
#Bonds: 20 | #Rotatable Bonds: 7 | Shape Complexity: 0.45454547 |
Stereocomplexity: 0.09090909 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 320 nM |
Binding MOAD | Kd : 320 nM |