PDB Entry (1dl7)

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Visualizer: MichelaNGLo

PDB ID: 1dl7 Resolution: 2.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 10859335 DOI: 10.1084/jem.191.12.2101
Protein
Protein Name: Ig lambda-1 chain V regions MOPC 104E/RPC20/J558/S104
Protein Class: ANTIBODY
Uniprot ID/ACC: P01724 (LV1B_MOUSE) Organism: Mus musculus
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 807.36 Depth: 20.6223
Hydrophobicity: 0.712644 Drug Score: 0.545874
Pocket Similarity: Calculate
Ligand
Ligand Name:   P-NITROPHENYL-PHOSPHOCHOLINE
HET ID:   NCH PubChem:   445100
DrugBank:   - ChEMBL:   CHEMBL1234651
Canonical SMILES:   O[P@](=O)(Oc1ccc(cc1)[N+](=O)[O-])OCC[N+](C)(C)C
Standard InChI:   InChI=1S/C11H17N2O6P/c1-13(2,3)8-9-18-20(16,17)19-11-6-4-10(5-7-11)12(14)15/h4-7H,8-9H2,1-3H3/p+1
Molecular Formula:   C11H18N2O6P+ Mol. Weight:   305.24417 Heavy Atoms:   20
Charge:   1 Is Chiral:   False logP:   2.32
HBD:   1 HBA:   4 TPSA:   111.39
#Bonds:   20 #Rotatable Bonds:   7 Shape Complexity:   0.45454547
Stereocomplexity:   0.09090909 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 320 nM
Binding MOAD Kd : 320 nM