PDB Entry (4lar)

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Visualizer: MichelaNGLo

PDB ID: 4lar Resolution: 2.38 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24349338 DOI: 10.1371/journal.pone.0082690
Protein
Protein Name: Single chain antibody fragment scFv6H4
Protein Class: ANTIBODY
Uniprot ID/ACC: - Organism: Mus musculus
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 373.056 Depth: 14.1195
Hydrophobicity: 0.785714 Drug Score: 0.761063
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2S)-1-phenylpropan-2-amine
HET ID:   1WE PubChem:   5826
DrugBank:   DB00182 ChEMBL:   CHEMBL612
Canonical SMILES:   C[C@@H](Cc1ccccc1)N
Standard InChI:   InChI=1S/C9H13N/c1-8(10)7-9-5-3-2-4-6-9/h2-6,8H,7,10H2,1H3/t8-/m0/s1
Molecular Formula:   C9H13N Mol. Weight:   135.20622 Heavy Atoms:   10
Charge:   0 Is Chiral:   True logP:   2.2766
HBD:   1 HBA:   1 TPSA:   26.02
#Bonds:   11 #Rotatable Bonds:   2 Shape Complexity:   0.33333334
Stereocomplexity:   0.11111111 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 20700 nM