PDB Entry (5vlm) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5vlm | Resolution: 3.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30190458 | DOI: 10.1038/s41467-018-05857-3 | |
Protein |
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Protein Name: EilR repressor | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: E3G817 (E3G817_ENTLS) | Organism: Enterobacter lignolyticus |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 501.184 | Depth: 46.0046 |
Hydrophobicity: 0.696787 | Drug Score: 0.14115 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: CRYSTAL VIOLET | ||
HET ID: CVI | PubChem: 3468 | |
DrugBank: DB00406 | ChEMBL: CHEMBL459265 | |
Canonical SMILES: C[N+](=C1C=CC(=C(c2ccc(cc2)N(C)C)c2ccc(cc2)N(C)C)C=C1)C | ||
Standard InChI: InChI=1S/C25H30N3/c1-26(2)22-13-7-19(8-14-22)25(20-9-15-23(16-10-20)27(3)4)21-11-17-24(18-12-21)28(5)6/h7-18H,1-6H3/q+1 | ||
Molecular Formula: C25H30N3+ | Mol. Weight: 372.5258 | Heavy Atoms: 28 |
Charge: 1 | Is Chiral: False | logP: 4.4596 |
HBD: 0 | HBA: 2 | TPSA: 9.49 |
#Bonds: 30 | #Rotatable Bonds: 4 | Shape Complexity: 0.24 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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