PDB Entry (4o9v)

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Visualizer: MichelaNGLo

PDB ID: 4o9v Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24794746 DOI: 10.1016/j.bmc.2014.04.013
Protein
Protein Name: Suppressor of tumorigenicity 14 protein
Protein Class: HYDROLASE
Uniprot ID/ACC: Q9Y5Y6 (ST14_HUMAN) Organism: Homo sapiens
Gene Symbol: ST14 Gene ID: 6768
Pocket Descriptors
Volume: 399.296 Depth: 20.2188
Hydrophobicity: 0.659091 Drug Score: 0.20199
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-(trans-4-aminocyclohexyl)-3,5-bis(4-carbamimidoylphenoxy)benzamide
HET ID:   NT4 PubChem:   66818569
DrugBank:   - ChEMBL:   CHEMBL3289023
Canonical SMILES:   N[C@@H]1CC[C@H](CC1)NC(=O)c1cc(cc(c1)Oc1ccc(cc1)C(=N)N)Oc1ccc(cc1)C(=N)N
Standard InChI:   InChI=1S/C27H30N6O3/c28-19-5-7-20(8-6-19)33-27(34)18-13-23(35-21-9-1-16(2-10-21)25(29)30)15-24(14-18)36-22-11-3-17(4-12-22)26(31)32/h1-4,9-15,19-20H,5-8,28H2,(H3,29,30)(H3,31,32)(H,33,34)/t19-,20-
Molecular Formula:   C27H30N6O3 Mol. Weight:   486.5655 Heavy Atoms:   36
Charge:   0 Is Chiral:   True logP:   6.5303
HBD:   6 HBA:   9 TPSA:   173.32
#Bonds:   41 #Rotatable Bonds:   9 Shape Complexity:   0.22222222
Stereocomplexity:   0.074074075 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Ki : 10 nM
Binding MOAD Ki : 10 nM