PDB Entry (6a55)

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Visualizer: MichelaNGLo

PDB ID: 6a55 Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30770407 DOI: 10.1128/AEM.03127-18
Protein
Protein Name: Novel protein with potential Cupin domain
Protein Class: LYASE
Uniprot ID/ACC: Q4FNM4 (Q4FNM4_PELUB) Organism: Pelagibacter ubique
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 297.6 Depth: 9.57497
Hydrophobicity: 0.794872 Drug Score: 0.882121
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-(dimethyl-lambda~4~-sulfanyl)propanoic acid
HET ID:   DQY PubChem:   416901
DrugBank:   - ChEMBL:   -
Canonical SMILES:   C[S](CCC(=O)O)C
Standard InChI:   InChI=1S/C5H11O2S/c1-8(2)4-3-5(6)7/h3-4H2,1-2H3,(H,6,7)
Molecular Formula:   C5H11O2S Mol. Weight:   135.20464 Heavy Atoms:   8
Charge:   0 Is Chiral:   False logP:   0.9896
HBD:   1 HBA:   2 TPSA:   62.6
#Bonds:   7 #Rotatable Bonds:   3 Shape Complexity:   0.8
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-