PDB Entry (6a55) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6a55 | Resolution: 1.6 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30770407 | DOI: 10.1128/AEM.03127-18 | |
Protein |
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Protein Name: Novel protein with potential Cupin domain | |
Protein Class: LYASE | |
Uniprot ID/ACC: Q4FNM4 (Q4FNM4_PELUB) | Organism: Pelagibacter ubique |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 297.6 | Depth: 9.57497 |
Hydrophobicity: 0.794872 | Drug Score: 0.882121 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-(dimethyl-lambda~4~-sulfanyl)propanoic acid | ||
HET ID: DQY | PubChem: 416901 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: C[S](CCC(=O)O)C | ||
Standard InChI: InChI=1S/C5H11O2S/c1-8(2)4-3-5(6)7/h3-4H2,1-2H3,(H,6,7) | ||
Molecular Formula: C5H11O2S | Mol. Weight: 135.20464 | Heavy Atoms: 8 |
Charge: 0 | Is Chiral: False | logP: 0.9896 |
HBD: 1 | HBA: 2 | TPSA: 62.6 |
#Bonds: 7 | #Rotatable Bonds: 3 | Shape Complexity: 0.8 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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