PDB Entry (4pp0) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4pp0 | Resolution: 1.57 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 25299655 | DOI: 10.1371/journal.ppat.1004444 | |
Protein |
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Protein Name: Nopaline-binding periplasmic protein | |
Protein Class: TRANSPORTER | |
Uniprot ID/ACC: P35120 (NOCT_AGRFC) | Organism: Agrobacterium fabrum |
Gene Symbol: - | Gene ID: 1137350 |
Pocket Descriptors | |
Volume: 552.704 | Depth: 24.9344 |
Hydrophobicity: 0.694581 | Drug Score: 0.0700823 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline | ||
HET ID: OP1 | PubChem: 22842220 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: NC(=N)NCCC[C@H](N1C(=O)CC[C@@H]1C(=O)O)C(=O)O | ||
Standard InChI: InChI=1S/C11H18N4O5/c12-11(13)14-5-1-2-6(9(17)18)15-7(10(19)20)3-4-8(15)16/h6-7H,1-5H2,(H,17,18)(H,19,20)(H4,12,13,14)/t6-,7+/m0/s1 | ||
Molecular Formula: C11H18N4O5 | Mol. Weight: 286.28442 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: True | logP: -0.0927 |
HBD: 5 | HBA: 9 | TPSA: 156.81 |
#Bonds: 22 | #Rotatable Bonds: 8 | Shape Complexity: 0.6363636 |
Stereocomplexity: 0.18181819 | Ligand Type: Small Molecule |
Binding Affinity |
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