PDB Entry (4pp0)

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Visualizer: MichelaNGLo

PDB ID: 4pp0 Resolution: 1.57 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25299655 DOI: 10.1371/journal.ppat.1004444
Protein
Protein Name: Nopaline-binding periplasmic protein
Protein Class: TRANSPORTER
Uniprot ID/ACC: P35120 (NOCT_AGRFC) Organism: Agrobacterium fabrum
Gene Symbol: - Gene ID: 1137350
Pocket Descriptors
Volume: 552.704 Depth: 24.9344
Hydrophobicity: 0.694581 Drug Score: 0.0700823
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline
HET ID:   OP1 PubChem:   22842220
DrugBank:   - ChEMBL:   -
Canonical SMILES:   NC(=N)NCCC[C@H](N1C(=O)CC[C@@H]1C(=O)O)C(=O)O
Standard InChI:   InChI=1S/C11H18N4O5/c12-11(13)14-5-1-2-6(9(17)18)15-7(10(19)20)3-4-8(15)16/h6-7H,1-5H2,(H,17,18)(H,19,20)(H4,12,13,14)/t6-,7+/m0/s1
Molecular Formula:   C11H18N4O5 Mol. Weight:   286.28442 Heavy Atoms:   20
Charge:   0 Is Chiral:   True logP:   -0.0927
HBD:   5 HBA:   9 TPSA:   156.81
#Bonds:   22 #Rotatable Bonds:   8 Shape Complexity:   0.6363636
Stereocomplexity:   0.18181819 Ligand Type:   Small Molecule
Binding Affinity
-