PDB Entry (2pk4)

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Visualizer: MichelaNGLo

PDB ID: 2pk4 Resolution: 2.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: 1657149 DOI: 10.1021/bi00107a030
Protein
Protein Name: Plasminogen
Protein Class: HYDROLASE
Uniprot ID/ACC: P00747 (PLMN_HUMAN) Organism: Homo sapiens
Gene Symbol: PLG Gene ID: 5340
Pocket Descriptors
Volume: None Depth: None
Hydrophobicity: None Drug Score: None
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-AMINOHEXANOIC ACID
HET ID:   ACA PubChem:   517030564
DrugBank:   DB00513 ChEMBL:   CHEMBL1046
Canonical SMILES:   NCCCCCC(=O)O
Standard InChI:   InChI=1S/C6H13NO2/c7-5-3-1-2-4-6(8)9/h1-5,7H2,(H,8,9)
Molecular Formula:   C6H13NO2 Mol. Weight:   131.17291 Heavy Atoms:   9
Charge:   0 Is Chiral:   False logP:   1.2904
HBD:   2 HBA:   3 TPSA:   63.32
#Bonds:   8 #Rotatable Bonds:   5 Shape Complexity:   0.8333333
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB IC50 : 105000 nM, IC50 : 40000 nM