PDB Entry (1cea) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1cea | Resolution: 2.06 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 8611560 | DOI: 10.1021/bi9521351 | |
Protein |
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Protein Name: Plasminogen | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00747 (PLMN_HUMAN) | Organism: Homo sapiens |
Gene Symbol: PLG | Gene ID: 5340 |
Pocket Descriptors | |
Volume: 655.744 | Depth: 26.4938 |
Hydrophobicity: 0.732824 | Drug Score: 0.66608 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-AMINOHEXANOIC ACID | ||
HET ID: ACA | PubChem: 517030564 | |
DrugBank: DB00513 | ChEMBL: CHEMBL1046 | |
Canonical SMILES: NCCCCCC(=O)O | ||
Standard InChI: InChI=1S/C6H13NO2/c7-5-3-1-2-4-6(8)9/h1-5,7H2,(H,8,9) | ||
Molecular Formula: C6H13NO2 | Mol. Weight: 131.17291 | Heavy Atoms: 9 |
Charge: 0 | Is Chiral: False | logP: 1.2904 |
HBD: 2 | HBA: 3 | TPSA: 63.32 |
#Bonds: 8 | #Rotatable Bonds: 5 | Shape Complexity: 0.8333333 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 11000 nM |
BindingDB | IC50 : 40000 nM, IC50 : 105000 nM |
Binding MOAD | Kd : 11000 nM |