PDB Entry (5irx)

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Visualizer: MichelaNGLo

PDB ID: 5irx Resolution: 2.95 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27281200 DOI: 10.1038/nature17964
Protein
Protein Name: Transient receptor potential cation channel subfamily V member 1
Protein Class: TRANSPORTER
Uniprot ID/ACC: O35433 (TRPV1_RAT) Organism: Rattus norvegicus
Gene Symbol: Trpv1 Gene ID: 83810
Pocket Descriptors
Volume: 439.488 Depth: 31.915
Hydrophobicity: 0.740741 Drug Score: 0.0300217
Pocket Similarity: Calculate
Ligand
Ligand Name:   (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium
HET ID:   6O8 PubChem:   119057466
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CCCCCC(=O)O[C@H](CO[P@@](=O)(OCC[N+](C)(C)C)O)COC(=O)CCCC
Standard InChI:   InChI=1S/C19H38NO8P/c1-6-8-10-12-19(22)28-17(15-25-18(21)11-9-7-2)16-27-29(23,24)26-14-13-20(3,4)5/h17H,6-16H2,1-5H3/p+1/t17-/m0/s1
Molecular Formula:   C19H39NO8P+ Mol. Weight:   440.48862 Heavy Atoms:   29
Charge:   1 Is Chiral:   True logP:   3.0517
HBD:   1 HBA:   8 TPSA:   118.17
#Bonds:   29 #Rotatable Bonds:   19 Shape Complexity:   0.8947368
Stereocomplexity:   0.10526316 Ligand Type:   Small Molecule
Binding Affinity
-