PDB Entry (5irx) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5irx | Resolution: 2.95 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27281200 | DOI: 10.1038/nature17964 | |
Protein |
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Protein Name: Transient receptor potential cation channel subfamily V member 1 | |
Protein Class: TRANSPORTER | |
Uniprot ID/ACC: O35433 (TRPV1_RAT) | Organism: Rattus norvegicus |
Gene Symbol: Trpv1 | Gene ID: 83810 |
Pocket Descriptors | |
Volume: 439.488 | Depth: 31.915 |
Hydrophobicity: 0.740741 | Drug Score: 0.0300217 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium | ||
HET ID: 6O8 | PubChem: 119057466 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CCCCCC(=O)O[C@H](CO[P@@](=O)(OCC[N+](C)(C)C)O)COC(=O)CCCC | ||
Standard InChI: InChI=1S/C19H38NO8P/c1-6-8-10-12-19(22)28-17(15-25-18(21)11-9-7-2)16-27-29(23,24)26-14-13-20(3,4)5/h17H,6-16H2,1-5H3/p+1/t17-/m0/s1 | ||
Molecular Formula: C19H39NO8P+ | Mol. Weight: 440.48862 | Heavy Atoms: 29 |
Charge: 1 | Is Chiral: True | logP: 3.0517 |
HBD: 1 | HBA: 8 | TPSA: 118.17 |
#Bonds: 29 | #Rotatable Bonds: 19 | Shape Complexity: 0.8947368 |
Stereocomplexity: 0.10526316 | Ligand Type: Small Molecule |
Binding Affinity |
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