PDB Entry (3ppr) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3ppr | Resolution: 2.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21366542 | DOI: 10.1042/BJ20102097 | |
Protein |
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Protein Name: Glycine betaine/carnitine/choline-binding protein OpuCC | |
Protein Class: TRANSPORTER | |
Uniprot ID/ACC: O32243 (OPUCC_BACSU) | Organism: Bacillus subtilis |
Gene Symbol: - | Gene ID: 936248 |
Pocket Descriptors | |
Volume: 541.184 | Depth: 18.8207 |
Hydrophobicity: 0.651163 | Drug Score: 0.140318 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID | ||
HET ID: 4CS | PubChem: 126041, 137208342, 6993223 | |
DrugBank: - | ChEMBL: CHEMBL1230264 | |
Canonical SMILES: OC(=O)[C@@H]1CCNC(=N1)C | ||
Standard InChI: InChI=1S/C6H10N2O2/c1-4-7-3-2-5(8-4)6(9)10/h5H,2-3H2,1H3,(H,7,8)(H,9,10)/t5-/m0/s1 | ||
Molecular Formula: C6H10N2O2 | Mol. Weight: 142.1558 | Heavy Atoms: 10 |
Charge: 0 | Is Chiral: True | logP: -0.3843 |
HBD: 2 | HBA: 4 | TPSA: 61.69 |
#Bonds: 11 | #Rotatable Bonds: 1 | Shape Complexity: 0.6666667 |
Stereocomplexity: 0.16666667 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 1500000 nM |
Binding MOAD | Kd : 1500000 nM |