PDB Entry (3ppr)

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Visualizer: MichelaNGLo

PDB ID: 3ppr Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21366542 DOI: 10.1042/BJ20102097
Protein
Protein Name: Glycine betaine/carnitine/choline-binding protein OpuCC
Protein Class: TRANSPORTER
Uniprot ID/ACC: O32243 (OPUCC_BACSU) Organism: Bacillus subtilis
Gene Symbol: - Gene ID: 936248
Pocket Descriptors
Volume: 541.184 Depth: 18.8207
Hydrophobicity: 0.651163 Drug Score: 0.140318
Pocket Similarity: Calculate
Ligand
Ligand Name:   (4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID
HET ID:   4CS PubChem:   126041, 137208342, 6993223
DrugBank:   - ChEMBL:   CHEMBL1230264
Canonical SMILES:   OC(=O)[C@@H]1CCNC(=N1)C
Standard InChI:   InChI=1S/C6H10N2O2/c1-4-7-3-2-5(8-4)6(9)10/h5H,2-3H2,1H3,(H,7,8)(H,9,10)/t5-/m0/s1
Molecular Formula:   C6H10N2O2 Mol. Weight:   142.1558 Heavy Atoms:   10
Charge:   0 Is Chiral:   True logP:   -0.3843
HBD:   2 HBA:   4 TPSA:   61.69
#Bonds:   11 #Rotatable Bonds:   1 Shape Complexity:   0.6666667
Stereocomplexity:   0.16666667 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 1500000 nM
Binding MOAD Kd : 1500000 nM