PDB Entry (3ppo)

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Visualizer: MichelaNGLo

PDB ID: 3ppo Resolution: 2.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21366542 DOI: 10.1042/BJ20102097
Protein
Protein Name: Glycine betaine/carnitine/choline-binding protein OpuCC
Protein Class: TRANSPORTER
Uniprot ID/ACC: O32243 (OPUCC_BACSU) Organism: Bacillus subtilis
Gene Symbol: - Gene ID: 936248
Pocket Descriptors
Volume: 565.632 Depth: 18.5969
Hydrophobicity: 0.655738 Drug Score: 0.182837
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2S)-3-carboxy-2-hydroxy-N,N,N-trimethylpropan-1-aminium
HET ID:   DCK PubChem:   160907
DrugBank:   - ChEMBL:   CHEMBL1738789
Canonical SMILES:   O[C@H](C[N+](C)(C)C)CC(=O)O
Standard InChI:   InChI=1S/C7H15NO3/c1-8(2,3)5-6(9)4-7(10)11/h6,9H,4-5H2,1-3H3/p+1/t6-/m0/s1
Molecular Formula:   C7H16NO3+ Mol. Weight:   162.20683 Heavy Atoms:   11
Charge:   1 Is Chiral:   True logP:   -0.4718
HBD:   2 HBA:   3 TPSA:   57.53
#Bonds:   11 #Rotatable Bonds:   4 Shape Complexity:   0.85714287
Stereocomplexity:   0.14285715 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 5000 nM