PDB Entry (3ppq) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3ppq | Resolution: 1.91 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21366542 | DOI: 10.1042/BJ20102097 | |
Protein |
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Protein Name: Glycine betaine/carnitine/choline-binding protein OpuCC | |
Protein Class: TRANSPORTER | |
Uniprot ID/ACC: O32243 (OPUCC_BACSU) | Organism: Bacillus subtilis |
Gene Symbol: - | Gene ID: 936248 |
Pocket Descriptors | |
Volume: 578.496 | Depth: 17.7825 |
Hydrophobicity: 0.651934 | Drug Score: 0.228186 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: CHOLINE ION | ||
HET ID: CHT | PubChem: 305 | |
DrugBank: DB00122 | ChEMBL: CHEMBL920 | |
Canonical SMILES: OCC[N+](C)(C)C | ||
Standard InChI: InChI=1S/C5H14NO/c1-6(2,3)4-5-7/h7H,4-5H2,1-3H3/q+1 | ||
Molecular Formula: C5H14NO+ | Mol. Weight: 104.17076 | Heavy Atoms: 7 |
Charge: 1 | Is Chiral: False | logP: -0.3151 |
HBD: 1 | HBA: 1 | TPSA: 20.23 |
#Bonds: 6 | #Rotatable Bonds: 2 | Shape Complexity: 1.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 28000 nM |
Binding MOAD | Kd : 28000 nM |