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PDB Entry (2b4l) Download |
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Visualizer: MichelaNGLo |
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| PDB ID: 2b4l | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
| PMID: 16445940 | DOI: 10.1016/j.jmb.2005.12.085 | |
Protein |
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| Protein Name: Glycine betaine-binding protein OpuAC | |
| Protein Class: TRANSPORTER | |
| Uniprot ID/ACC: P46922 (OPUAC_BACSU) | Organism: Bacillus subtilis |
| Gene Symbol: - | Gene ID: 51993721 |
Pocket Descriptors | |
| Volume: 226.944 | Depth: 11.5931 |
| Hydrophobicity: 0.757895 | Drug Score: 0.33921 |
| Pocket Similarity: Calculate | |
Ligand |
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| Ligand Name: TRIMETHYL GLYCINE | ||
| HET ID: BET | PubChem: 248 | |
| DrugBank: DB04455 | ChEMBL: CHEMBL95889 | |
| Canonical SMILES: OC(=O)C[N+](C)(C)C | ||
| Standard InChI: InChI=1S/C5H11NO2/c1-6(2,3)4-5(7)8/h4H2,1-3H3/p+1 | ||
| Molecular Formula: C5H12NO2+ | Mol. Weight: 118.15428 | Heavy Atoms: 8 |
| Charge: 1 | Is Chiral: False | logP: -0.2228 |
| HBD: 1 | HBA: 2 | TPSA: 37.3 |
| #Bonds: 7 | #Rotatable Bonds: 2 | Shape Complexity: 0.8 |
| Stereocomplexity: 0.0 | Ligand Type: Small Molecule | |
Binding Affinity |
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| Database Name | Value |
| PDBBind | Kd : 17000 nM |