PDB Entry (5v3x)

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Visualizer: MichelaNGLo

PDB ID: 5v3x Resolution: 1.94 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28669536 DOI: 10.1016/j.cell.2017.06.025
Protein
Protein Name: Polyketide synthase Pks13
Protein Class: TRANSFERASE
Uniprot ID/ACC: I6X8D2 (I6X8D2_MYCTU) Organism: Mycobacterium tuberculosis
Gene Symbol: - Gene ID: 23489911
Pocket Descriptors
Volume: 535.68 Depth: 25.7817
Hydrophobicity: 0.659218 Drug Score: 0.105786
Pocket Similarity: Calculate
Ligand
Ligand Name:   ethyl 5-hydroxy-4-[(4-methylpiperidin-1-yl)methyl]-2-phenyl-1-benzofuran-3-carboxylate
HET ID:   I28 PubChem:   2129850, 4921756
DrugBank:   - ChEMBL:   CHEMBL4063356
Canonical SMILES:   CCOC(=O)c1c(oc2c1c(CN1CCC(CC1)C)c(cc2)O)c1ccccc1
Standard InChI:   InChI=1S/C24H27NO4/c1-3-28-24(27)22-21-18(15-25-13-11-16(2)12-14-25)19(26)9-10-20(21)29-23(22)17-7-5-4-6-8-17/h4-10,16,26H,3,11-15H2,1-2H3
Molecular Formula:   C24H27NO4 Mol. Weight:   393.4755 Heavy Atoms:   29
Charge:   0 Is Chiral:   False logP:   5.1519
HBD:   1 HBA:   5 TPSA:   62.91
#Bonds:   32 #Rotatable Bonds:   6 Shape Complexity:   0.375
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB IC50 : 260 nM
Binding MOAD IC50 : 260 nM