PDB Entry (5v3x) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5v3x | Resolution: 1.94 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28669536 | DOI: 10.1016/j.cell.2017.06.025 | |
Protein |
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Protein Name: Polyketide synthase Pks13 | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: I6X8D2 (I6X8D2_MYCTU) | Organism: Mycobacterium tuberculosis |
Gene Symbol: - | Gene ID: 23489911 |
Pocket Descriptors | |
Volume: 535.68 | Depth: 25.7817 |
Hydrophobicity: 0.659218 | Drug Score: 0.105786 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: ethyl 5-hydroxy-4-[(4-methylpiperidin-1-yl)methyl]-2-phenyl-1-benzofuran-3-carboxylate | ||
HET ID: I28 | PubChem: 2129850, 4921756 | |
DrugBank: - | ChEMBL: CHEMBL4063356 | |
Canonical SMILES: CCOC(=O)c1c(oc2c1c(CN1CCC(CC1)C)c(cc2)O)c1ccccc1 | ||
Standard InChI: InChI=1S/C24H27NO4/c1-3-28-24(27)22-21-18(15-25-13-11-16(2)12-14-25)19(26)9-10-20(21)29-23(22)17-7-5-4-6-8-17/h4-10,16,26H,3,11-15H2,1-2H3 | ||
Molecular Formula: C24H27NO4 | Mol. Weight: 393.4755 | Heavy Atoms: 29 |
Charge: 0 | Is Chiral: False | logP: 5.1519 |
HBD: 1 | HBA: 5 | TPSA: 62.91 |
#Bonds: 32 | #Rotatable Bonds: 6 | Shape Complexity: 0.375 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | IC50 : 260 nM |
Binding MOAD | IC50 : 260 nM |