PDB Entry (3pya)

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PDB ID: 3pya Resolution: 2.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Ent-copalyl diphosphate synthase, chloroplastic
Protein Class: ISOMERASE
Uniprot ID/ACC: Q38802 (KSA_ARATH) Organism: Arabidopsis thaliana
Gene Symbol: - Gene ID: 828182
Pocket Descriptors
Volume: 789.888 Depth: 26.6101
Hydrophobicity: 0.721239 Drug Score: 0.508057
Pocket Similarity: Calculate
Ligand
Ligand Name:   S-[(2E,6E,10E)-14-(dimethylamino)-3,7,11-trimethyltetradeca-2,6,10-trien-1-yl] trihydrogen thiodiphosphate
HET ID:   AG8 PubChem:   51346763
DrugBank:   - ChEMBL:   CHEMBL1738763
Canonical SMILES:   CN(CCC/C(=C/CC/C(=C/CC/C(=C/CS[P@](=O)(OP(=O)(O)O)O)/C)/C)/C)C
Standard InChI:   InChI=1S/C19H37NO6P2S/c1-17(9-6-11-18(2)13-8-15-20(4)5)10-7-12-19(3)14-16-29-28(24,25)26-27(21,22)23/h10-11,14H,6-9,12-13,15-16H2,1-5H3,(H,24,25)(H2,21,22,23)/b17-10+,18-11+,19-14+
Molecular Formula:   C19H37NO6P2S Mol. Weight:   469.5127 Heavy Atoms:   29
Charge:   0 Is Chiral:   False logP:   5.6704
HBD:   3 HBA:   8 TPSA:   152.22
#Bonds:   28 #Rotatable Bonds:   15 Shape Complexity:   0.68421054
Stereocomplexity:   0.05263158 Ligand Type:   Small Molecule
Binding Affinity
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