PDB Entry (3pya) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 3pya | Resolution: 2.25 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
|
Protein Name: Ent-copalyl diphosphate synthase, chloroplastic | |
Protein Class: ISOMERASE | |
Uniprot ID/ACC: Q38802 (KSA_ARATH) | Organism: Arabidopsis thaliana |
Gene Symbol: - | Gene ID: 828182 |
Pocket Descriptors | |
Volume: 789.888 | Depth: 26.6101 |
Hydrophobicity: 0.721239 | Drug Score: 0.508057 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: S-[(2E,6E,10E)-14-(dimethylamino)-3,7,11-trimethyltetradeca-2,6,10-trien-1-yl] trihydrogen thiodiphosphate | ||
HET ID: AG8 | PubChem: 51346763 | |
DrugBank: - | ChEMBL: CHEMBL1738763 | |
Canonical SMILES: CN(CCC/C(=C/CC/C(=C/CC/C(=C/CS[P@](=O)(OP(=O)(O)O)O)/C)/C)/C)C | ||
Standard InChI: InChI=1S/C19H37NO6P2S/c1-17(9-6-11-18(2)13-8-15-20(4)5)10-7-12-19(3)14-16-29-28(24,25)26-27(21,22)23/h10-11,14H,6-9,12-13,15-16H2,1-5H3,(H,24,25)(H2,21,22,23)/b17-10+,18-11+,19-14+ | ||
Molecular Formula: C19H37NO6P2S | Mol. Weight: 469.5127 | Heavy Atoms: 29 |
Charge: 0 | Is Chiral: False | logP: 5.6704 |
HBD: 3 | HBA: 8 | TPSA: 152.22 |
#Bonds: 28 | #Rotatable Bonds: 15 | Shape Complexity: 0.68421054 |
Stereocomplexity: 0.05263158 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |