PDB Entry (5db1) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5db1 | Resolution: 1.86 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26744767 | DOI: 10.1021/acs.jmedchem.5b01305 | |
Protein |
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Protein Name: Menin | |
Protein Class: SIGNALING PROTEIN | |
Uniprot ID/ACC: O00255 (MEN1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: MEN1 | Gene ID: 4221 |
Pocket Descriptors | |
Volume: 744.256 | Depth: 32.6912 |
Hydrophobicity: 0.67713 | Drug Score: 0.330411 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-methoxy-5-[(4-{[6-(2,2,2-trifluoroethyl)thieno[2,3-d]pyrimidin-4-yl]amino}piperidin-1-yl)methyl]-1H-indole-2-carbonitrile | ||
HET ID: 58O | PubChem: 90405035 | |
DrugBank: - | ChEMBL: CHEMBL3780810 | |
Canonical SMILES: COc1cc2[nH]c(cc2cc1CN1CCC(CC1)Nc1ncnc2c1cc(s2)CC(F)(F)F)C#N | ||
Standard InChI: InChI=1S/C24H23F3N6OS/c1-34-21-9-20-14(7-17(11-28)31-20)6-15(21)12-33-4-2-16(3-5-33)32-22-19-8-18(10-24(25,26)27)35-23(19)30-13-29-22/h6-9,13,16,31H,2-5,10,12H2,1H3,(H,29,30,32) | ||
Molecular Formula: C24H23F3N6OS | Mol. Weight: 500.5392 | Heavy Atoms: 35 |
Charge: 0 | Is Chiral: False | logP: 5.24508 |
HBD: 2 | HBA: 7 | TPSA: 118.1 |
#Bonds: 40 | #Rotatable Bonds: 7 | Shape Complexity: 0.39130434 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 22 nM |