PDB Entry (4ckr)

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PDB ID: 4ckr Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23899692 DOI: 10.1021/cb400430t
Protein
Protein Name: Epithelial discoidin domain-containing receptor 1
Protein Class: TRANSFERASE
Uniprot ID/ACC: Q08345 (DDR1_HUMAN) Organism: Homo sapiens
Gene Symbol: DDR1 Gene ID: 780
Pocket Descriptors
Volume: 862.4 Depth: 23.8462
Hydrophobicity: 0.744966 Drug Score: 0.896899
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-[(4-ethylpiperazin-1-yl)methyl]-n-{4-methyl-3-[(2-oxo-2,3-dihydro-1h-indol-5-yl)oxy]phenyl}-3-(trifluoromethyl)benzamide
HET ID:   DI1 PubChem:   72836888
DrugBank:   - ChEMBL:   CHEMBL3421914
Canonical SMILES:   CCN1CCN(CC1)Cc1ccc(cc1C(F)(F)F)C(=O)Nc1ccc(c(c1)Oc1ccc2c(c1)CC(=O)N2)C
Standard InChI:   InChI=1S/C30H31F3N4O3/c1-3-36-10-12-37(13-11-36)18-21-6-5-20(15-25(21)30(31,32)33)29(39)34-23-7-4-19(2)27(17-23)40-24-8-9-26-22(14-24)16-28(38)35-26/h4-9,14-15,17H,3,10-13,16,18H2,1-2H3,(H,34,39)(H,35,38)
Molecular Formula:   C30H31F3N4O3 Mol. Weight:   552.58734 Heavy Atoms:   40
Charge:   0 Is Chiral:   False logP:   5.7773
HBD:   2 HBA:   7 TPSA:   73.91
#Bonds:   44 #Rotatable Bonds:   9 Shape Complexity:   0.33333334
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB IC50 : 105 nM, IC50 : 86 nM, EC50 : 86 nM
Binding MOAD IC50 : 105 nM