PDB Entry (2wxd)

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Visualizer: MichelaNGLo

PDB ID: 2wxd Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20124710 DOI: 10.1107/S1744309109052865
Protein
Protein Name: Myrosinase MA1
Protein Class: HYDROLASE
Uniprot ID/ACC: P29736 (MYRA_SINAL) Organism: Sinapis alba
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 988.608 Depth: 26.5571
Hydrophobicity: 0.710843 Drug Score: 0.561156
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-(DIMETHYLAMINO)ETHYL (1Z)-2-PHENYL-N-(SULFOOXY)ETHANIMIDOTHIOATE
HET ID:   E18 PubChem:   44157894, 72199470
DrugBank:   - ChEMBL:   CHEMBL1232437
Canonical SMILES:   C[NH+](C)CCSC(=NOS(=O)(=O)[O-])CC1=CC=CC=C1
Standard InChI:   InChI=1S/C12H18N2O4S2/c1-14(2)8-9-19-12(13-18-20(15,16)17)10-11-6-4-3-5-7-11/h3-7H,8-10H2,1-2H3,(H,15,16,17)
Molecular Formula:   C12H18N2O4S2 Mol. Weight:   318.41232 Heavy Atoms:   20
Charge:   0 Is Chiral:   False logP:   0.9779
HBD:   1 HBA:   6 TPSA:   116.91
#Bonds:   21 #Rotatable Bonds:   8 Shape Complexity:   0.41666666
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind IC50 : 3300 nM
Binding MOAD IC50 : 3300 nM