PDB Entry (4wyd)

Download

Visualizer: MichelaNGLo

PDB ID: 4wyd Resolution: 1.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26068403 DOI: 10.1021/acs.jmedchem.5b00092
Protein
Protein Name: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Protein Class: TRANSFERASE
Uniprot ID/ACC: P9WQ81 (BIOA_MYCTU) Organism: Mycobacterium tuberculosis
Gene Symbol: - Gene ID: 23492266
Pocket Descriptors
Volume: 834.816 Depth: 33.3883
Hydrophobicity: 0.705882 Drug Score: 0.461168
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-methyl-1-[4-(1H-pyrazol-1-ylmethyl)phenyl]methanamine
HET ID:   3VR PubChem:   18525877
DrugBank:   - ChEMBL:   CHEMBL3581508
Canonical SMILES:   CNCc1ccc(cc1)Cn1cccn1
Standard InChI:   InChI=1S/C12H15N3/c1-13-9-11-3-5-12(6-4-11)10-15-8-2-7-14-15/h2-8,13H,9-10H2,1H3
Molecular Formula:   C12H15N3 Mol. Weight:   201.2676 Heavy Atoms:   15
Charge:   0 Is Chiral:   False logP:   2.0417
HBD:   1 HBA:   3 TPSA:   29.85
#Bonds:   16 #Rotatable Bonds:   4 Shape Complexity:   0.25
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 11700 nM