PDB Entry (4wyd) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4wyd | Resolution: 1.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26068403 | DOI: 10.1021/acs.jmedchem.5b00092 | |
Protein |
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Protein Name: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: P9WQ81 (BIOA_MYCTU) | Organism: Mycobacterium tuberculosis |
Gene Symbol: - | Gene ID: 23492266 |
Pocket Descriptors | |
Volume: 834.816 | Depth: 33.3883 |
Hydrophobicity: 0.705882 | Drug Score: 0.461168 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-methyl-1-[4-(1H-pyrazol-1-ylmethyl)phenyl]methanamine | ||
HET ID: 3VR | PubChem: 18525877 | |
DrugBank: - | ChEMBL: CHEMBL3581508 | |
Canonical SMILES: CNCc1ccc(cc1)Cn1cccn1 | ||
Standard InChI: InChI=1S/C12H15N3/c1-13-9-11-3-5-12(6-4-11)10-15-8-2-7-14-15/h2-8,13H,9-10H2,1H3 | ||
Molecular Formula: C12H15N3 | Mol. Weight: 201.2676 | Heavy Atoms: 15 |
Charge: 0 | Is Chiral: False | logP: 2.0417 |
HBD: 1 | HBA: 3 | TPSA: 29.85 |
#Bonds: 16 | #Rotatable Bonds: 4 | Shape Complexity: 0.25 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Kd : 11700 nM |