PDB Entry (2h2e)

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Visualizer: MichelaNGLo

PDB ID: 2h2e Resolution: 2.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 16682405 DOI: 10.1074/jbc.M602257200
Protein
Protein Name: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q43088 (RBCMT_PEA) Organism: Pisum sativum
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 137.984 Depth: 30.3753
Hydrophobicity: 0.729592 Drug Score: 0.0000143187
Pocket Similarity: Calculate
Ligand
Ligand Name:   LYSINE
HET ID:   LYS PubChem:   24848423, 5460926, 641599
DrugBank:   - ChEMBL:   CHEMBL1234128
Canonical SMILES:   [NH3+]CCCC[C@@H](C(=O)O)N
Standard InChI:   InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p+1/t5-/m0/s1
Molecular Formula:   C6H15N2O2+ Mol. Weight:   147.1955 Heavy Atoms:   10
Charge:   1 Is Chiral:   True logP:   -0.4892
HBD:   3 HBA:   3 TPSA:   90.96
#Bonds:   13 #Rotatable Bonds:   5 Shape Complexity:   0.8333333
Stereocomplexity:   0.16666667 Ligand Type:   Small Molecule
Binding Affinity
-