PDB Entry (5kas)

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Visualizer: MichelaNGLo

PDB ID: 5kas Resolution: 1.62 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27687724 DOI: 10.1074/jbc.M116.755801
Protein
Protein Name: Acid sphingomyelinase-like phosphodiesterase 3b
Protein Class: HYDROLASE
Uniprot ID/ACC: P58242 (ASM3B_MOUSE) Organism: Mus musculus
Gene Symbol: Smpdl3b Gene ID: 100340
Pocket Descriptors
Volume: 416.192 Depth: 16.0698
Hydrophobicity: 0.666667 Drug Score: 0.450035
Pocket Similarity: Calculate
Ligand
Ligand Name:   PHOSPHOCHOLINE
HET ID:   PC PubChem:   1014
DrugBank:   DB03945 ChEMBL:   CHEMBL1235161
Canonical SMILES:   OP(=O)(OCC[N+](C)(C)C)O
Standard InChI:   InChI=1S/C5H14NO4P/c1-6(2,3)4-5-10-11(7,8)9/h4-5H2,1-3H3,(H-,7,8,9)/p+1
Molecular Formula:   C5H15NO4P+ Mol. Weight:   184.15067 Heavy Atoms:   11
Charge:   1 Is Chiral:   False logP:   -0.1981
HBD:   2 HBA:   4 TPSA:   76.57
#Bonds:   10 #Rotatable Bonds:   4 Shape Complexity:   1.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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