PDB Entry (3vtr) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 3vtr | Resolution: 2.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23300622 | DOI: 10.1371/journal.pone.0052225 | |
Protein |
|
Protein Name: Beta-hexosaminidase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q06GJ0 (Q06GJ0_OSTFU) | Organism: Ostrinia furnacalis |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 645.248 | Depth: 15.6063 |
Hydrophobicity: 0.684444 | Drug Score: 0.509593 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: 2-deoxy-2-(trimethylammonio)-beta-D-glucopyranose | ||
HET ID: TMX | PubChem: 7788282 | |
DrugBank: - | ChEMBL: CHEMBL1236336 | |
Canonical SMILES: OC[C@H]1O[C@@H](O)[C@@H]([C@H]([C@@H]1O)O)[N+](C)(C)C | ||
Standard InChI: InChI=1S/C9H20NO5/c1-10(2,3)6-8(13)7(12)5(4-11)15-9(6)14/h5-9,11-14H,4H2,1-3H3/q+1/t5-,6-,7-,8-,9-/m1/s1 | ||
Molecular Formula: C9H20NO5+ | Mol. Weight: 222.2588 | Heavy Atoms: 15 |
Charge: 1 | Is Chiral: True | logP: -2.5075 |
HBD: 4 | HBA: 5 | TPSA: 90.15 |
#Bonds: 20 | #Rotatable Bonds: 2 | Shape Complexity: 1.0 |
Stereocomplexity: 0.5555556 | Ligand Type: Small Molecule |
Binding Affinity |
|
Database Name | Value |
PDBBind | Ki : 2714 nM |
Binding MOAD | Ki : 2714 nM |