PDB Entry (3q9e) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3q9e | Resolution: 2.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21268586 | DOI: 10.1021/bi101859k | |
Protein |
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Protein Name: Acetylpolyamine amidohydrolase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q48935 (APAH_MYCRA) | Organism: Mycoplana ramosa |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 53.568 | Depth: 19.2518 |
Hydrophobicity: 0.710145 | Drug Score: 0.00558764 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]acetamide | ||
HET ID: SP5 | PubChem: 916 | |
DrugBank: - | ChEMBL: CHEMBL131004 | |
Canonical SMILES: NCCCNCCCCNCCCNC(=O)C | ||
Standard InChI: InChI=1S/C12H28N4O/c1-12(17)16-11-5-10-15-8-3-2-7-14-9-4-6-13/h14-15H,2-11,13H2,1H3,(H,16,17) | ||
Molecular Formula: C12H28N4O | Mol. Weight: 244.37692 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: False | logP: 1.6938 |
HBD: 4 | HBA: 5 | TPSA: 79.18 |
#Bonds: 16 | #Rotatable Bonds: 13 | Shape Complexity: 0.9166667 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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