PDB Entry (3q9e)

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Visualizer: MichelaNGLo

PDB ID: 3q9e Resolution: 2.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21268586 DOI: 10.1021/bi101859k
Protein
Protein Name: Acetylpolyamine amidohydrolase
Protein Class: HYDROLASE
Uniprot ID/ACC: Q48935 (APAH_MYCRA) Organism: Mycoplana ramosa
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 53.568 Depth: 19.2518
Hydrophobicity: 0.710145 Drug Score: 0.00558764
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]acetamide
HET ID:   SP5 PubChem:   916
DrugBank:   - ChEMBL:   CHEMBL131004
Canonical SMILES:   NCCCNCCCCNCCCNC(=O)C
Standard InChI:   InChI=1S/C12H28N4O/c1-12(17)16-11-5-10-15-8-3-2-7-14-9-4-6-13/h14-15H,2-11,13H2,1H3,(H,16,17)
Molecular Formula:   C12H28N4O Mol. Weight:   244.37692 Heavy Atoms:   17
Charge:   0 Is Chiral:   False logP:   1.6938
HBD:   4 HBA:   5 TPSA:   79.18
#Bonds:   16 #Rotatable Bonds:   13 Shape Complexity:   0.9166667
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-