PDB Entry (1b5q) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1b5q | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 10368296 | DOI: 10.1016/S0969-2126(99)80037-9 | |
Protein |
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Protein Name: Polyamine oxidase 1 | |
Protein Class: OXIDOREDUCTASE | |
Uniprot ID/ACC: O64411 (PAO1_MAIZE) | Organism: Zea mays |
Gene Symbol: - | Gene ID: 541983 |
Pocket Descriptors | |
Volume: 495.104 | Depth: 42.0625 |
Hydrophobicity: 0.735113 | Drug Score: 0.152087 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N,N'-BIS(2,3-BUTADIENYL)-1,4-BUTANE-DIAMINE | ||
HET ID: MD2 | PubChem: 4026 | |
DrugBank: DB04188 | ChEMBL: CHEMBL417844 | |
Canonical SMILES: C=C=CCNCCCCNCC=C=C | ||
Standard InChI: InChI=1S/C12H20N2/c1-3-5-9-13-11-7-8-12-14-10-6-4-2/h5-6,13-14H,1-2,7-12H2 | ||
Molecular Formula: C12H20N2 | Mol. Weight: 192.3006 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: False | logP: 2.4098 |
HBD: 2 | HBA: 2 | TPSA: 24.06 |
#Bonds: 13 | #Rotatable Bonds: 9 | Shape Complexity: 0.6 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Ki : 550 nM |