PDB Entry (6npd)

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PDB ID: 6npd Resolution: 1.78 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30789718 DOI: 10.1021/acs.biochem.9b00044
Protein
Protein Name: TmpA, 2-trimethylaminoethylphosphonate hydroxylase
Protein Class: OXIDOREDUCTASE
Uniprot ID/ACC: A0A4V8H042 (A0A4V8H042_9RHOB) Organism: Leisingera caerulea
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 224.448 Depth: 14.9482
Hydrophobicity: 0.658537 Drug Score: 0.100788
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2R)-2-hydroxy-N,N,N-trimethyl-2-phosphonoethan-1-aminium
HET ID:   KVP PubChem:   137347774
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@H](P(=O)(O)O)C[N+](C)(C)C
Standard InChI:   InChI=1S/C5H14NO4P/c1-6(2,3)4-5(7)11(8,9)10/h5,7H,4H2,1-3H3,(H-,8,9,10)/p+1/t5-/m1/s1
Molecular Formula:   C5H15NO4P+ Mol. Weight:   184.15067 Heavy Atoms:   11
Charge:   1 Is Chiral:   True logP:   -0.8113
HBD:   3 HBA:   4 TPSA:   87.57
#Bonds:   11 #Rotatable Bonds:   3 Shape Complexity:   1.0
Stereocomplexity:   0.2 Ligand Type:   Small Molecule
Binding Affinity
-