PDB Entry (6npd) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6npd | Resolution: 1.78 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30789718 | DOI: 10.1021/acs.biochem.9b00044 | |
Protein |
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Protein Name: TmpA, 2-trimethylaminoethylphosphonate hydroxylase | |
Protein Class: OXIDOREDUCTASE | |
Uniprot ID/ACC: A0A4V8H042 (A0A4V8H042_9RHOB) | Organism: Leisingera caerulea |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 224.448 | Depth: 14.9482 |
Hydrophobicity: 0.658537 | Drug Score: 0.100788 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (2R)-2-hydroxy-N,N,N-trimethyl-2-phosphonoethan-1-aminium | ||
HET ID: KVP | PubChem: 137347774 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O[C@H](P(=O)(O)O)C[N+](C)(C)C | ||
Standard InChI: InChI=1S/C5H14NO4P/c1-6(2,3)4-5(7)11(8,9)10/h5,7H,4H2,1-3H3,(H-,8,9,10)/p+1/t5-/m1/s1 | ||
Molecular Formula: C5H15NO4P+ | Mol. Weight: 184.15067 | Heavy Atoms: 11 |
Charge: 1 | Is Chiral: True | logP: -0.8113 |
HBD: 3 | HBA: 4 | TPSA: 87.57 |
#Bonds: 11 | #Rotatable Bonds: 3 | Shape Complexity: 1.0 |
Stereocomplexity: 0.2 | Ligand Type: Small Molecule |
Binding Affinity |
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