PDB Entry (6dq7)

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PDB ID: 6dq7 Resolution: 1.85 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Lysine-specific demethylase 5A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: P29375 (KDM5A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM5A Gene ID: 5927
Pocket Descriptors
Volume: 1455.1 Depth: 33.2866
Hydrophobicity: 0.69697 Drug Score: 0.842637
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-{6-[4-(hydroxyacetyl)-1,4-diazepan-1-yl]-2-(pyridin-2-yl)pyrimidin-4-yl}-beta-alanine
HET ID:   H6M PubChem:   138753233
DrugBank:   - ChEMBL:   -
Canonical SMILES:   OCC(=O)N1CCCN(CC1)c1cc(NCCC(=O)O)nc(n1)c1ccccn1
Standard InChI:   InChI=1S/C19H24N6O4/c26-13-17(27)25-9-3-8-24(10-11-25)16-12-15(21-7-5-18(28)29)22-19(23-16)14-4-1-2-6-20-14/h1-2,4,6,12,26H,3,5,7-11,13H2,(H,28,29)(H,21,22,23)
Molecular Formula:   C19H24N6O4 Mol. Weight:   400.43167 Heavy Atoms:   29
Charge:   0 Is Chiral:   False logP:   0.5321
HBD:   3 HBA:   10 TPSA:   131.78
#Bonds:   31 #Rotatable Bonds:   8 Shape Complexity:   0.42105263
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-