PDB Entry (6dq7) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6dq7 | Resolution: 1.85 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 5A | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: P29375 (KDM5A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM5A | Gene ID: 5927 |
Pocket Descriptors | |
Volume: 1455.1 | Depth: 33.2866 |
Hydrophobicity: 0.69697 | Drug Score: 0.842637 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-{6-[4-(hydroxyacetyl)-1,4-diazepan-1-yl]-2-(pyridin-2-yl)pyrimidin-4-yl}-beta-alanine | ||
HET ID: H6M | PubChem: 138753233 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: OCC(=O)N1CCCN(CC1)c1cc(NCCC(=O)O)nc(n1)c1ccccn1 | ||
Standard InChI: InChI=1S/C19H24N6O4/c26-13-17(27)25-9-3-8-24(10-11-25)16-12-15(21-7-5-18(28)29)22-19(23-16)14-4-1-2-6-20-14/h1-2,4,6,12,26H,3,5,7-11,13H2,(H,28,29)(H,21,22,23) | ||
Molecular Formula: C19H24N6O4 | Mol. Weight: 400.43167 | Heavy Atoms: 29 |
Charge: 0 | Is Chiral: False | logP: 0.5321 |
HBD: 3 | HBA: 10 | TPSA: 131.78 |
#Bonds: 31 | #Rotatable Bonds: 8 | Shape Complexity: 0.42105263 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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