PDB Entry (6qpl)

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Visualizer: MichelaNGLo

PDB ID: 6qpl Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31260300 DOI: 10.1021/acs.jmedchem.9b00522
Protein
Protein Name: Spindlin-1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9Y657 (SPIN1_HUMAN) Organism: Homo sapiens
Gene Symbol: SPIN1 Gene ID: 10927
Pocket Descriptors
Volume: 246.592 Depth: 12.2246
Hydrophobicity: 0.725806 Drug Score: 0.0565604
Pocket Similarity: Calculate
Ligand
Ligand Name:   [3-(aminomethyl)-5-[3-(1,3-dihydroisoindol-2-yl)propoxy]-4-methoxy-phenyl]methanamine
HET ID:   JC5 PubChem:   138455182
DrugBank:   - ChEMBL:   -
Canonical SMILES:   NCc1cc(OCCCN2Cc3c(C2)cccc3)c(c(c1)CN)OC
Standard InChI:   InChI=1S/C20H27N3O2/c1-24-20-18(12-22)9-15(11-21)10-19(20)25-8-4-7-23-13-16-5-2-3-6-17(16)14-23/h2-3,5-6,9-10H,4,7-8,11-14,21-22H2,1H3
Molecular Formula:   C20H27N3O2 Mol. Weight:   341.44727 Heavy Atoms:   25
Charge:   0 Is Chiral:   False logP:   3.7358
HBD:   2 HBA:   5 TPSA:   73.74
#Bonds:   27 #Rotatable Bonds:   8 Shape Complexity:   0.4
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 77 nM