PDB Entry (5jsj) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5jsj | Resolution: 2.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28504676 | DOI: 10.1038/nchembio.2377 | |
Protein |
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Protein Name: Spindlin-1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9Y657 (SPIN1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: SPIN1 | Gene ID: 10927 |
Pocket Descriptors | |
Volume: 552.576 | Depth: 29.366 |
Hydrophobicity: 0.7 | Drug Score: 0.219738 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [4-(2-pyrrolidin-1-ylethyl)piperidin-1-yl]-[4-[4-(2-pyrrolidin-1-ylethyl)piperidin-1-yl]carbonyl-3-[[4-(pyrrolidin-1-ylmethoxy)phenyl]amino]phenyl]methanone | ||
HET ID: 6PD | PubChem: 126480597 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C(c1ccc(c(c1)Nc1ccc(cc1)OCN1CCCC1)C(=O)N1CCC(CC1)CCN1CCCC1)N1CCC(CC1)CCN1CCCC1 | ||
Standard InChI: InChI=1S/C41H60N6O3/c48-40(46-27-15-33(16-28-46)13-25-43-19-1-2-20-43)35-7-12-38(41(49)47-29-17-34(18-30-47)14-26-44-21-3-4-22-44)39(31-35)42-36-8-10-37(11-9-36)50-32-45-23-5-6-24-45/h7-12,31,33-34,42H,1-6,13-30,32H2 | ||
Molecular Formula: C41H60N6O3 | Mol. Weight: 684.9535 | Heavy Atoms: 50 |
Charge: 0 | Is Chiral: False | logP: 6.301 |
HBD: 1 | HBA: 8 | TPSA: 71.6 |
#Bonds: 56 | #Rotatable Bonds: 15 | Shape Complexity: 0.6585366 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Kd : 3000 nM |