PDB Entry (5jsj)

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Visualizer: MichelaNGLo

PDB ID: 5jsj Resolution: 2.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28504676 DOI: 10.1038/nchembio.2377
Protein
Protein Name: Spindlin-1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9Y657 (SPIN1_HUMAN) Organism: Homo sapiens
Gene Symbol: SPIN1 Gene ID: 10927
Pocket Descriptors
Volume: 552.576 Depth: 29.366
Hydrophobicity: 0.7 Drug Score: 0.219738
Pocket Similarity: Calculate
Ligand
Ligand Name:   [4-(2-pyrrolidin-1-ylethyl)piperidin-1-yl]-[4-[4-(2-pyrrolidin-1-ylethyl)piperidin-1-yl]carbonyl-3-[[4-(pyrrolidin-1-ylmethoxy)phenyl]amino]phenyl]methanone
HET ID:   6PD PubChem:   126480597
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C(c1ccc(c(c1)Nc1ccc(cc1)OCN1CCCC1)C(=O)N1CCC(CC1)CCN1CCCC1)N1CCC(CC1)CCN1CCCC1
Standard InChI:   InChI=1S/C41H60N6O3/c48-40(46-27-15-33(16-28-46)13-25-43-19-1-2-20-43)35-7-12-38(41(49)47-29-17-34(18-30-47)14-26-44-21-3-4-22-44)39(31-35)42-36-8-10-37(11-9-36)50-32-45-23-5-6-24-45/h7-12,31,33-34,42H,1-6,13-30,32H2
Molecular Formula:   C41H60N6O3 Mol. Weight:   684.9535 Heavy Atoms:   50
Charge:   0 Is Chiral:   False logP:   6.301
HBD:   1 HBA:   8 TPSA:   71.6
#Bonds:   56 #Rotatable Bonds:   15 Shape Complexity:   0.6585366
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 3000 nM