PDB Entry (5jsg)

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Visualizer: MichelaNGLo

PDB ID: 5jsg Resolution: 2.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28504676 DOI: 10.1038/nchembio.2377
Protein
Protein Name: Spindlin-1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9Y657 (SPIN1_HUMAN) Organism: Homo sapiens
Gene Symbol: SPIN1 Gene ID: 10927
Pocket Descriptors
Volume: 973.056 Depth: 29.0212
Hydrophobicity: 0.681979 Drug Score: 0.588031
Pocket Similarity: Calculate
Ligand
Ligand Name:   [2-(phenylamino)-1,4-phenylene]bis({4-[2-(pyrrolidin-1-yl)ethyl]piperidin-1-yl}methanone)
HET ID:   6P9 PubChem:   126480585
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C(c1ccc(c(c1)Nc1ccccc1)C(=O)N1CCC(CC1)CCN1CCCC1)N1CCC(CC1)CCN1CCCC1
Standard InChI:   InChI=1S/C36H51N5O2/c42-35(40-24-14-29(15-25-40)12-22-38-18-4-5-19-38)31-10-11-33(34(28-31)37-32-8-2-1-3-9-32)36(43)41-26-16-30(17-27-41)13-23-39-20-6-7-21-39/h1-3,8-11,28-30,37H,4-7,12-27H2
Molecular Formula:   C36H51N5O2 Mol. Weight:   585.82245 Heavy Atoms:   43
Charge:   0 Is Chiral:   False logP:   5.931
HBD:   1 HBA:   6 TPSA:   59.13
#Bonds:   48 #Rotatable Bonds:   12 Shape Complexity:   0.6111111
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 15000 nM