PDB Entry (5jsg) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5jsg | Resolution: 2.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28504676 | DOI: 10.1038/nchembio.2377 | |
Protein |
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Protein Name: Spindlin-1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9Y657 (SPIN1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: SPIN1 | Gene ID: 10927 |
Pocket Descriptors | |
Volume: 973.056 | Depth: 29.0212 |
Hydrophobicity: 0.681979 | Drug Score: 0.588031 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [2-(phenylamino)-1,4-phenylene]bis({4-[2-(pyrrolidin-1-yl)ethyl]piperidin-1-yl}methanone) | ||
HET ID: 6P9 | PubChem: 126480585 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C(c1ccc(c(c1)Nc1ccccc1)C(=O)N1CCC(CC1)CCN1CCCC1)N1CCC(CC1)CCN1CCCC1 | ||
Standard InChI: InChI=1S/C36H51N5O2/c42-35(40-24-14-29(15-25-40)12-22-38-18-4-5-19-38)31-10-11-33(34(28-31)37-32-8-2-1-3-9-32)36(43)41-26-16-30(17-27-41)13-23-39-20-6-7-21-39/h1-3,8-11,28-30,37H,4-7,12-27H2 | ||
Molecular Formula: C36H51N5O2 | Mol. Weight: 585.82245 | Heavy Atoms: 43 |
Charge: 0 | Is Chiral: False | logP: 5.931 |
HBD: 1 | HBA: 6 | TPSA: 59.13 |
#Bonds: 48 | #Rotatable Bonds: 12 | Shape Complexity: 0.6111111 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Kd : 15000 nM |