PDB Entry (4fl6)

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Visualizer: MichelaNGLo

PDB ID: 4fl6 Resolution: 2.55 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23292653 DOI: 10.1038/nchembio.1157
Protein
Protein Name: Lethal(3)malignant brain tumor-like protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96JM7 (LMBL3_HUMAN) Organism: Homo sapiens
Gene Symbol: L3MBTL3 Gene ID: 84456
Pocket Descriptors
Volume: 760.832 Depth: 27.3053
Hydrophobicity: 0.738776 Drug Score: 0.30632
Pocket Similarity: Calculate
Ligand
Ligand Name:   [2-(phenylamino)benzene-1,4-diyl]bis{[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone}
HET ID:   UWN PubChem:   57339144
DrugBank:   - ChEMBL:   CHEMBL2426364
Canonical SMILES:   O=C(c1ccc(c(c1)Nc1ccccc1)C(=O)N1CCC(CC1)N1CCCC1)N1CCC(CC1)N1CCCC1
Standard InChI:   InChI=1S/C32H43N5O2/c38-31(36-20-12-27(13-21-36)34-16-4-5-17-34)25-10-11-29(30(24-25)33-26-8-2-1-3-9-26)32(39)37-22-14-28(15-23-37)35-18-6-7-19-35/h1-3,8-11,24,27-28,33H,4-7,12-23H2
Molecular Formula:   C32H43N5O2 Mol. Weight:   529.7161 Heavy Atoms:   39
Charge:   0 Is Chiral:   False logP:   4.6556
HBD:   1 HBA:   6 TPSA:   59.13
#Bonds:   44 #Rotatable Bonds:   8 Shape Complexity:   0.5625
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Kd : 120 nM, Kd : 64 nM, IC50 : 24 nM, IC50 : 49 nM