PDB Entry (4fl6) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4fl6 | Resolution: 2.55 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23292653 | DOI: 10.1038/nchembio.1157 | |
Protein |
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Protein Name: Lethal(3)malignant brain tumor-like protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q96JM7 (LMBL3_HUMAN) | Organism: Homo sapiens |
Gene Symbol: L3MBTL3 | Gene ID: 84456 |
Pocket Descriptors | |
Volume: 760.832 | Depth: 27.3053 |
Hydrophobicity: 0.738776 | Drug Score: 0.30632 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [2-(phenylamino)benzene-1,4-diyl]bis{[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone} | ||
HET ID: UWN | PubChem: 57339144 | |
DrugBank: - | ChEMBL: CHEMBL2426364 | |
Canonical SMILES: O=C(c1ccc(c(c1)Nc1ccccc1)C(=O)N1CCC(CC1)N1CCCC1)N1CCC(CC1)N1CCCC1 | ||
Standard InChI: InChI=1S/C32H43N5O2/c38-31(36-20-12-27(13-21-36)34-16-4-5-17-34)25-10-11-29(30(24-25)33-26-8-2-1-3-9-26)32(39)37-22-14-28(15-23-37)35-18-6-7-19-35/h1-3,8-11,24,27-28,33H,4-7,12-23H2 | ||
Molecular Formula: C32H43N5O2 | Mol. Weight: 529.7161 | Heavy Atoms: 39 |
Charge: 0 | Is Chiral: False | logP: 4.6556 |
HBD: 1 | HBA: 6 | TPSA: 59.13 |
#Bonds: 44 | #Rotatable Bonds: 8 | Shape Complexity: 0.5625 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | Kd : 120 nM, Kd : 64 nM, IC50 : 24 nM, IC50 : 49 nM |