PDB Entry (3p8h) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3p8h | Resolution: 2.55 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21417280 | DOI: 10.1021/jm200045v | |
Protein |
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Protein Name: Lethal(3)malignant brain tumor-like protein 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9Y468 (LMBL1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: L3MBTL1 | Gene ID: 26013 |
Pocket Descriptors | |
Volume: 59.136 | Depth: 11.9832 |
Hydrophobicity: 0.797101 | Drug Score: 0.155205 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-bromo-5-[(4-pyrrolidin-1-ylpiperidin-1-yl)carbonyl]pyridine | ||
HET ID: P8H | PubChem: 46931242 | |
DrugBank: - | ChEMBL: CHEMBL1235119 | |
Canonical SMILES: Brc1cncc(c1)C(=O)N1CCC(CC1)N1CCCC1 | ||
Standard InChI: InChI=1S/C15H20BrN3O/c16-13-9-12(10-17-11-13)15(20)19-7-3-14(4-8-19)18-5-1-2-6-18/h9-11,14H,1-8H2 | ||
Molecular Formula: C15H20BrN3O | Mol. Weight: 338.2428 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: False | logP: 2.4203 |
HBD: 0 | HBA: 4 | TPSA: 36.44 |
#Bonds: 22 | #Rotatable Bonds: 3 | Shape Complexity: 0.6 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 5000 nM |
BindingDB | IC50 : 21000 nM |