PDB Entry (3p8h)

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Visualizer: MichelaNGLo

PDB ID: 3p8h Resolution: 2.55 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21417280 DOI: 10.1021/jm200045v
Protein
Protein Name: Lethal(3)malignant brain tumor-like protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9Y468 (LMBL1_HUMAN) Organism: Homo sapiens
Gene Symbol: L3MBTL1 Gene ID: 26013
Pocket Descriptors
Volume: 59.136 Depth: 11.9832
Hydrophobicity: 0.797101 Drug Score: 0.155205
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-bromo-5-[(4-pyrrolidin-1-ylpiperidin-1-yl)carbonyl]pyridine
HET ID:   P8H PubChem:   46931242
DrugBank:   - ChEMBL:   CHEMBL1235119
Canonical SMILES:   Brc1cncc(c1)C(=O)N1CCC(CC1)N1CCCC1
Standard InChI:   InChI=1S/C15H20BrN3O/c16-13-9-12(10-17-11-13)15(20)19-7-3-14(4-8-19)18-5-1-2-6-18/h9-11,14H,1-8H2
Molecular Formula:   C15H20BrN3O Mol. Weight:   338.2428 Heavy Atoms:   20
Charge:   0 Is Chiral:   False logP:   2.4203
HBD:   0 HBA:   4 TPSA:   36.44
#Bonds:   22 #Rotatable Bonds:   3 Shape Complexity:   0.6
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 5000 nM
BindingDB IC50 : 21000 nM