|
PDB Entry (2reg) Download |
||
|
Visualizer: MichelaNGLo |
||
| PDB ID: 2reg | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
| PMID: 18779321 | DOI: 10.1074/jbc.M806021200 | |
Protein |
|
| Protein Name: Putative choline ABC transporter, periplasmic solute-binding component | |
| Protein Class: TRANSPORTER | |
| Uniprot ID/ACC: Q92N37 (Q92N37_RHIME) | Organism: Rhizobium meliloti |
| Gene Symbol: - | Gene ID: 48085336 |
Pocket Descriptors | |
| Volume: 230.592 | Depth: 16.6487 |
| Hydrophobicity: 0.723881 | Drug Score: 0.0180422 |
| Pocket Similarity: Calculate | |
Ligand |
||
| | ||
| Ligand Name: CHOLINE ION | ||
| HET ID: CHT | PubChem: 305 | |
| DrugBank: DB00122 | ChEMBL: CHEMBL920 | |
| Canonical SMILES: OCC[N+](C)(C)C | ||
| Standard InChI: InChI=1S/C5H14NO/c1-6(2,3)4-5-7/h7H,4-5H2,1-3H3/q+1 | ||
| Molecular Formula: C5H14NO+ | Mol. Weight: 104.17076 | Heavy Atoms: 7 |
| Charge: 1 | Is Chiral: False | logP: -0.3151 |
| HBD: 1 | HBA: 1 | TPSA: 20.23 |
| #Bonds: 6 | #Rotatable Bonds: 2 | Shape Complexity: 1.0 |
| Stereocomplexity: 0.0 | Ligand Type: Small Molecule | |
Binding Affinity |
|
| Database Name | Value |
| PDBBind | Kd : 2300 nM |
| Binding MOAD | Kd : 2700 nM |