PDB Entry (1gvm) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1gvm | Resolution: 2.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 12139941 | DOI: 10.1016/S0022-2836(02)00596-X | |
Protein |
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Protein Name: Autolysin | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P06653 (ALYS_STRPN) | Organism: Streptococcus pneumoniae serotype 4 |
Gene Symbol: - | Gene ID: 45652842 |
Pocket Descriptors | |
Volume: 42.624 | Depth: 8.46901 |
Hydrophobicity: 0.84375 | Drug Score: 0.12672 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: DECYLAMINE-N,N-DIMETHYL-N-OXIDE | ||
HET ID: DDQ | PubChem: 62452 | |
DrugBank: DB02613 | ChEMBL: CHEMBL1232157 | |
Canonical SMILES: CCCCCCCCCC[N+](C)(C)[O-] | ||
Standard InChI: InChI=1S/C12H27NO/c1-4-5-6-7-8-9-10-11-12-13(2,3)14/h4-12H2,1-3H3 | ||
Molecular Formula: C12H27NO | Mol. Weight: 201.34888 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: False | logP: 3.7222 |
HBD: 0 | HBA: 1 | TPSA: 29.43 |
#Bonds: 13 | #Rotatable Bonds: 9 | Shape Complexity: 1.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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