PDB Entry (4i9j)

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Visualizer: MichelaNGLo

PDB ID: 4i9j Resolution: 1.85 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23576432 DOI: 10.1074/jbc.M113.466532
Protein
Protein Name: 1-phosphatidylinositol phosphodiesterase
Protein Class: HYDROLASE
Uniprot ID/ACC: P45723 (PLC_STAAE) Organism: Staphylococcus aureus
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 335.296 Depth: 17.2418
Hydrophobicity: 0.787234 Drug Score: 0.201413
Pocket Similarity: Calculate
Ligand
Ligand Name:   (4S,7R)-7-(heptanoyloxy)-4-hydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphahexadecan-1-aminium 4-oxide
HET ID:   XP5 PubChem:   193376
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CCCC(=O)O[C@@H](CO[P@@](=O)(OCC[N+](C)(C)C)O)COC(=O)CCC
Standard InChI:   InChI=1S/C16H32NO8P/c1-6-8-15(18)22-12-14(25-16(19)9-7-2)13-24-26(20,21)23-11-10-17(3,4)5/h14H,6-13H2,1-5H3/p+1/t14-/m1/s1
Molecular Formula:   C16H33NO8P+ Mol. Weight:   398.40887 Heavy Atoms:   26
Charge:   1 Is Chiral:   True logP:   1.8814
HBD:   1 HBA:   8 TPSA:   118.17
#Bonds:   26 #Rotatable Bonds:   16 Shape Complexity:   0.875
Stereocomplexity:   0.125 Ligand Type:   Small Molecule
Binding Affinity
-