PDB Entry (4da5)

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Visualizer: MichelaNGLo

PDB ID: 4da5 Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23416529 DOI: 10.1016/j.bbapap.2013.02.008
Protein
Protein Name: Choline kinase alpha
Protein Class: TRANSFERASE
Uniprot ID/ACC: P35790 (CHKA_HUMAN) Organism: Homo sapiens
Gene Symbol: CHKA Gene ID: 1119
Pocket Descriptors
Volume: 106.752 Depth: 10.895
Hydrophobicity: 0.767857 Drug Score: 0.161562
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3R)-1-azabicyclo[2.2.2]oct-3-yl[bis(5-chlorothiophen-2-yl)]methanol
HET ID:   0H7 PubChem:   1166471
DrugBank:   - ChEMBL:   -
Canonical SMILES:   OC(c1ccc(s1)Cl)(c1ccc(s1)Cl)[C@H]1CN2CCC1CC2
Standard InChI:   InChI=1S/C16H17Cl2NOS2/c17-14-3-1-12(21-14)16(20,13-2-4-15(18)22-13)11-9-19-7-5-10(11)6-8-19/h1-4,10-11,20H,5-9H2/t11-/m0/s1
Molecular Formula:   C16H17Cl2NOS2 Mol. Weight:   374.34827 Heavy Atoms:   22
Charge:   0 Is Chiral:   True logP:   4.632
HBD:   1 HBA:   4 TPSA:   79.95
#Bonds:   26 #Rotatable Bonds:   3 Shape Complexity:   0.5
Stereocomplexity:   0.1875 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 360 nM
Binding MOAD Ki : 360 nM