PDB Entry (3feg) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3feg | Resolution: 1.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 20299452 | DOI: 10.1074/jbc.M109.039024 | |
Protein |
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Protein Name: Choline/ethanolamine kinase | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: Q9Y259 (CHKB_HUMAN) | Organism: Homo sapiens |
Gene Symbol: CHKB | Gene ID: 1120 |
Pocket Descriptors | |
Volume: 264.832 | Depth: 11.3912 |
Hydrophobicity: 0.764706 | Drug Score: 0.210567 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (2S)-2-[4'-({dimethyl[2-(phosphonooxy)ethyl]ammonio}acetyl)biphenyl-4-yl]-2-hydroxy-4,4-dimethylmorpholin-4-ium | ||
HET ID: HC7 | PubChem: 25113187 | |
DrugBank: - | ChEMBL: CHEMBL1233251 | |
Canonical SMILES: O=C(c1ccc(cc1)c1ccc(cc1)[C@]1(O)OCC[N+](C1)(C)C)C[N+](CCOP(=O)(O)O)(C)C | ||
Standard InChI: InChI=1S/C24H33N2O7P/c1-25(2,14-16-33-34(29,30)31)17-23(27)21-7-5-19(6-8-21)20-9-11-22(12-10-20)24(28)18-26(3,4)13-15-32-24/h5-12,28H,13-18H2,1-4H3/p+2/t24-/m1/s1 | ||
Molecular Formula: C24H35N2O7P++ | Mol. Weight: 494.51767 | Heavy Atoms: 34 |
Charge: 2 | Is Chiral: True | logP: 1.9325 |
HBD: 3 | HBA: 7 | TPSA: 123.1 |
#Bonds: 36 | #Rotatable Bonds: 9 | Shape Complexity: 0.45833334 |
Stereocomplexity: 0.041666668 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 45000 nM |