PDB Entry (3g15)

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Visualizer: MichelaNGLo

PDB ID: 3g15 Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20299452 DOI: 10.1074/jbc.M109.039024
Protein
Protein Name: Choline kinase alpha
Protein Class: TRANSFERASE
Uniprot ID/ACC: P35790 (CHKA_HUMAN) Organism: Homo sapiens
Gene Symbol: CHKA Gene ID: 1119
Pocket Descriptors
Volume: 130.624 Depth: 13.2047
Hydrophobicity: 0.780822 Drug Score: 0.248424
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2S,2'S)-2,2'-biphenyl-4,4'-diylbis(2-hydroxy-4,4-dimethylmorpholin-4-ium)
HET ID:   HC6 PubChem:   25023712
DrugBank:   - ChEMBL:   CHEMBL1229238
Canonical SMILES:   O[C@]1(OCC[N+](C1)(C)C)c1ccc(cc1)c1ccc(cc1)[C@]1(O)OCC[N+](C1)(C)C
Standard InChI:   InChI=1S/C24H34N2O4/c1-25(2)13-15-29-23(27,17-25)21-9-5-19(6-10-21)20-7-11-22(12-8-20)24(28)18-26(3,4)14-16-30-24/h5-12,27-28H,13-18H2,1-4H3/q+2/t23-,24-/m1/s1
Molecular Formula:   C24H34N2O4++ Mol. Weight:   414.53775 Heavy Atoms:   30
Charge:   2 Is Chiral:   True logP:   1.7746
HBD:   2 HBA:   4 TPSA:   58.92
#Bonds:   33 #Rotatable Bonds:   3 Shape Complexity:   0.5
Stereocomplexity:   0.083333336 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 100 nM