PDB Entry (5eqp)

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PDB ID: 5eqp Resolution: 2.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26700752 DOI: 10.1021/acs.jmedchem.5b01552
Protein
Protein Name: Choline kinase alpha
Protein Class: TRANSFERASE
Uniprot ID/ACC: P35790 (CHKA_HUMAN) Organism: Homo sapiens
Gene Symbol: CHKA Gene ID: 1119
Pocket Descriptors
Volume: 146.112 Depth: 12.2636
Hydrophobicity: 0.769231 Drug Score: 0.0747214
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-[(4-methyl-1,4-diazepan-1-yl)methyl]quinoline
HET ID:   5R9 PubChem:   102596393
DrugBank:   - ChEMBL:   CHEMBL3765077
Canonical SMILES:   CN1CCCN(CC1)Cc1ccc2c(c1)cccn2
Standard InChI:   InChI=1S/C16H21N3/c1-18-8-3-9-19(11-10-18)13-14-5-6-16-15(12-14)4-2-7-17-16/h2,4-7,12H,3,8-11,13H2,1H3
Molecular Formula:   C16H21N3 Mol. Weight:   255.35805 Heavy Atoms:   19
Charge:   0 Is Chiral:   False logP:   2.2481
HBD:   0 HBA:   3 TPSA:   19.37
#Bonds:   21 #Rotatable Bonds:   2 Shape Complexity:   0.4375
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Kd : 4000 nM, Kd : 3900 nM
Binding MOAD IC50 : 3900 nM