PDB Entry (5eqe) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5eqe | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26700752 | DOI: 10.1021/acs.jmedchem.5b01552 | |
Protein |
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Protein Name: Choline kinase alpha | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: P35790 (CHKA_HUMAN) | Organism: Homo sapiens |
Gene Symbol: CHKA | Gene ID: 1119 |
Pocket Descriptors | |
Volume: 500.096 | Depth: 22.8551 |
Hydrophobicity: 0.743961 | Drug Score: 0.159892 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]methanamine | ||
HET ID: 5R8 | PubChem: 18525875 | |
DrugBank: - | ChEMBL: CHEMBL3763993 | |
Canonical SMILES: NCc1ccc(cc1)CN1CCCN(CC1)C | ||
Standard InChI: InChI=1S/C14H23N3/c1-16-7-2-8-17(10-9-16)12-14-5-3-13(11-15)4-6-14/h3-6H,2,7-12,15H2,1H3 | ||
Molecular Formula: C14H23N3 | Mol. Weight: 233.35252 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: False | logP: 1.8589 |
HBD: 1 | HBA: 3 | TPSA: 32.5 |
#Bonds: 18 | #Rotatable Bonds: 3 | Shape Complexity: 0.5714286 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | Kd : 132000 nM, Kd : 87000 nM |
Binding MOAD | IC50 : 87000 nM |