PDB Entry (5eqe)

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Visualizer: MichelaNGLo

PDB ID: 5eqe Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26700752 DOI: 10.1021/acs.jmedchem.5b01552
Protein
Protein Name: Choline kinase alpha
Protein Class: TRANSFERASE
Uniprot ID/ACC: P35790 (CHKA_HUMAN) Organism: Homo sapiens
Gene Symbol: CHKA Gene ID: 1119
Pocket Descriptors
Volume: 500.096 Depth: 22.8551
Hydrophobicity: 0.743961 Drug Score: 0.159892
Pocket Similarity: Calculate
Ligand
Ligand Name:   [4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]methanamine
HET ID:   5R8 PubChem:   18525875
DrugBank:   - ChEMBL:   CHEMBL3763993
Canonical SMILES:   NCc1ccc(cc1)CN1CCCN(CC1)C
Standard InChI:   InChI=1S/C14H23N3/c1-16-7-2-8-17(10-9-16)12-14-5-3-13(11-15)4-6-14/h3-6H,2,7-12,15H2,1H3
Molecular Formula:   C14H23N3 Mol. Weight:   233.35252 Heavy Atoms:   17
Charge:   0 Is Chiral:   False logP:   1.8589
HBD:   1 HBA:   3 TPSA:   32.5
#Bonds:   18 #Rotatable Bonds:   3 Shape Complexity:   0.5714286
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Kd : 132000 nM, Kd : 87000 nM
Binding MOAD IC50 : 87000 nM