PDB Entry (5eqy)

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PDB ID: 5eqy Resolution: 2.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26700752 DOI: 10.1021/acs.jmedchem.5b01552
Protein
Protein Name: Choline kinase alpha
Protein Class: TRANSFERASE
Uniprot ID/ACC: P35790 (CHKA_HUMAN) Organism: Homo sapiens
Gene Symbol: CHKA Gene ID: 1119
Pocket Descriptors
Volume: 140.608 Depth: 11.6801
Hydrophobicity: 0.769231 Drug Score: 0.0645959
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-[(4-methyl-1,4-diazepan-1-yl)methyl]-2-[4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]benzenecarbonitrile
HET ID:   5RA PubChem:   78425823
DrugBank:   - ChEMBL:   CHEMBL3763540
Canonical SMILES:   N#Cc1cc(ccc1c1ccc(cc1)CN1CCCN(CC1)C)CN1CCCN(CC1)C
Standard InChI:   InChI=1S/C27H37N5/c1-29-11-3-13-31(17-15-29)21-23-5-8-25(9-6-23)27-10-7-24(19-26(27)20-28)22-32-14-4-12-30(2)16-18-32/h5-10,19H,3-4,11-18,21-22H2,1-2H3
Molecular Formula:   C27H37N5 Mol. Weight:   431.61618 Heavy Atoms:   32
Charge:   0 Is Chiral:   False logP:   3.25188
HBD:   0 HBA:   5 TPSA:   36.75
#Bonds:   35 #Rotatable Bonds:   5 Shape Complexity:   0.53846157
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Kd : 10 nM, Kd : 66 nM
Binding MOAD IC50 : 70 nM