PDB Entry (5eqy) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5eqy | Resolution: 2.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26700752 | DOI: 10.1021/acs.jmedchem.5b01552 | |
Protein |
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Protein Name: Choline kinase alpha | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: P35790 (CHKA_HUMAN) | Organism: Homo sapiens |
Gene Symbol: CHKA | Gene ID: 1119 |
Pocket Descriptors | |
Volume: 140.608 | Depth: 11.6801 |
Hydrophobicity: 0.769231 | Drug Score: 0.0645959 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 5-[(4-methyl-1,4-diazepan-1-yl)methyl]-2-[4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]benzenecarbonitrile | ||
HET ID: 5RA | PubChem: 78425823 | |
DrugBank: - | ChEMBL: CHEMBL3763540 | |
Canonical SMILES: N#Cc1cc(ccc1c1ccc(cc1)CN1CCCN(CC1)C)CN1CCCN(CC1)C | ||
Standard InChI: InChI=1S/C27H37N5/c1-29-11-3-13-31(17-15-29)21-23-5-8-25(9-6-23)27-10-7-24(19-26(27)20-28)22-32-14-4-12-30(2)16-18-32/h5-10,19H,3-4,11-18,21-22H2,1-2H3 | ||
Molecular Formula: C27H37N5 | Mol. Weight: 431.61618 | Heavy Atoms: 32 |
Charge: 0 | Is Chiral: False | logP: 3.25188 |
HBD: 0 | HBA: 5 | TPSA: 36.75 |
#Bonds: 35 | #Rotatable Bonds: 5 | Shape Complexity: 0.53846157 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | Kd : 10 nM, Kd : 66 nM |
Binding MOAD | IC50 : 70 nM |