PDB Entry (4b5d)

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Visualizer: MichelaNGLo

PDB ID: 4b5d Resolution: 2.19 Å Exp. Method: X-RAY DIFFRACTION
PMID: 22928944 DOI: 10.1021/jm3008739
Protein
Protein Name: Achbp
Protein Class: SIGNALING PROTEIN
Uniprot ID/ACC: I6L8L2 (I6L8L2_CAPTE) Organism: Capitella teleta
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 587.776 Depth: 31.7977
Hydrophobicity: 0.716 Drug Score: 0.146718
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[(1R,2S)-2-[5-[[(2S)-azetidin-2-yl]methoxy]pyridin-3-yl]cyclopropyl]ethanol
HET ID:   SW4 PubChem:   45254040
DrugBank:   - ChEMBL:   CHEMBL2024087
Canonical SMILES:   OCC[C@H]1C[C@@H]1c1cncc(c1)OC[C@@H]1CCN1
Standard InChI:   InChI=1S/C14H20N2O2/c17-4-2-10-6-14(10)11-5-13(8-15-7-11)18-9-12-1-3-16-12/h5,7-8,10,12,14,16-17H,1-4,6,9H2/t10-,12-,14-/m0/s1
Molecular Formula:   C14H20N2O2 Mol. Weight:   248.3208 Heavy Atoms:   18
Charge:   0 Is Chiral:   True logP:   1.637
HBD:   2 HBA:   4 TPSA:   54.38
#Bonds:   23 #Rotatable Bonds:   6 Shape Complexity:   0.64285713
Stereocomplexity:   0.21428572 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 12.800000190734863 nM
Binding MOAD Ki : 12.800000190734863 nM