PDB Entry (2x00)

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Visualizer: MichelaNGLo

PDB ID: 2x00 Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20224036 DOI: 10.1073/pnas.0912372107
Protein
Protein Name: Soluble acetylcholine receptor
Protein Class: SIGNALING PROTEIN
Uniprot ID/ACC: Q8WSF8 (Q8WSF8_APLCA) Organism: Aplysia californica
Gene Symbol: - Gene ID: 100533247
Pocket Descriptors
Volume: 91.968 Depth: 13.2134
Hydrophobicity: 0.763636 Drug Score: 0.266313
Pocket Similarity: Calculate
Ligand
Ligand Name:   GYMNODIMINE A
HET ID:   GYN PubChem:   44631817
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@H]1CC[C@@H]2O[C@H]([C@@H](C2)C)/C(=C/CCC2=NCCC[C@@]32[C@@H](/C=C/1C)C(=C(CC3)[C@@H]1C[C@@H](C(=O)O1)C)C)/C
Standard InChI:   InChI=1S/C32H47NO4/c1-19-8-6-9-29-32(13-7-15-33-29)14-12-25(28-18-22(4)31(35)37-28)23(5)26(32)17-20(2)27(34)11-10-24-16-21(3)30(19)36-24/h8,17,21-22,24,26-28,30,34H,6-7,9-16,18H2,1-5H3/b19-8+,20-17+/t21-,22+,24+,26+,27+,28+,30+,32+/m1/s1
Molecular Formula:   C32H47NO4 Mol. Weight:   509.71988 Heavy Atoms:   37
Charge:   0 Is Chiral:   True logP:   5.9424
HBD:   1 HBA:   5 TPSA:   68.12
#Bonds:   48 #Rotatable Bonds:   1 Shape Complexity:   0.75
Stereocomplexity:   0.25 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 0.004699999932199717 nM
Binding MOAD Kd : 0.004699999932199717 nM