PDB Entry (2x00) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2x00 | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 20224036 | DOI: 10.1073/pnas.0912372107 | |
Protein |
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Protein Name: Soluble acetylcholine receptor | |
Protein Class: SIGNALING PROTEIN | |
Uniprot ID/ACC: Q8WSF8 (Q8WSF8_APLCA) | Organism: Aplysia californica |
Gene Symbol: - | Gene ID: 100533247 |
Pocket Descriptors | |
Volume: 91.968 | Depth: 13.2134 |
Hydrophobicity: 0.763636 | Drug Score: 0.266313 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: GYMNODIMINE A | ||
HET ID: GYN | PubChem: 44631817 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O[C@H]1CC[C@@H]2O[C@H]([C@@H](C2)C)/C(=C/CCC2=NCCC[C@@]32[C@@H](/C=C/1C)C(=C(CC3)[C@@H]1C[C@@H](C(=O)O1)C)C)/C | ||
Standard InChI: InChI=1S/C32H47NO4/c1-19-8-6-9-29-32(13-7-15-33-29)14-12-25(28-18-22(4)31(35)37-28)23(5)26(32)17-20(2)27(34)11-10-24-16-21(3)30(19)36-24/h8,17,21-22,24,26-28,30,34H,6-7,9-16,18H2,1-5H3/b19-8+,20-17+/t21-,22+,24+,26+,27+,28+,30+,32+/m1/s1 | ||
Molecular Formula: C32H47NO4 | Mol. Weight: 509.71988 | Heavy Atoms: 37 |
Charge: 0 | Is Chiral: True | logP: 5.9424 |
HBD: 1 | HBA: 5 | TPSA: 68.12 |
#Bonds: 48 | #Rotatable Bonds: 1 | Shape Complexity: 0.75 |
Stereocomplexity: 0.25 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 0.004699999932199717 nM |
Binding MOAD | Kd : 0.004699999932199717 nM |