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PDB Entry (2byq) Download |
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Visualizer: MichelaNGLo |
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| PDB ID: 2byq | Resolution: 3.4 Å | Exp. Method: X-RAY DIFFRACTION |
| PMID: 16193063 | DOI: 10.1038/sj.emboj.7600828 | |
Protein |
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| Protein Name: Soluble acetylcholine receptor | |
| Protein Class: SIGNALING PROTEIN | |
| Uniprot ID/ACC: Q8WSF8 (Q8WSF8_APLCA) | Organism: Aplysia californica |
| Gene Symbol: - | Gene ID: 100533247 |
Pocket Descriptors | |
| Volume: 478.848 | Depth: 27.4169 |
| Hydrophobicity: 0.659664 | Drug Score: 0.0268408 |
| Pocket Similarity: Calculate | |
Ligand |
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| Ligand Name: EPIBATIDINE | ||
| HET ID: EPJ | PubChem: 854023 | |
| DrugBank: DB07720 | ChEMBL: CHEMBL298826 | |
| Canonical SMILES: Clc1ccc(cn1)[C@H]1C[C@H]2N[C@@H]1CC2 | ||
| Standard InChI: InChI=1S/C11H13ClN2/c12-11-4-1-7(6-13-11)9-5-8-2-3-10(9)14-8/h1,4,6,8-10,14H,2-3,5H2/t8-,9+,10+/m0/s1 | ||
| Molecular Formula: C11H13ClN2 | Mol. Weight: 208.68732 | Heavy Atoms: 14 |
| Charge: 0 | Is Chiral: True | logP: 2.6717 |
| HBD: 1 | HBA: 2 | TPSA: 24.92 |
| #Bonds: 19 | #Rotatable Bonds: 1 | Shape Complexity: 0.54545456 |
| Stereocomplexity: 0.27272728 | Ligand Type: Small Molecule | |
Binding Affinity |
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| Database Name | Value |
| BindingDB | Ki : 7.400000095367432 nM, Ki : 1 nM |